Cow genome map
| Conread name: | Ss1.1-rplun0112_o20.5 |
| Conread position: | 231-412 |
| Cow position: | chrX:25950336-25950155 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 150, 68 |
| Conread position: | 231-412 |
| Cow position: | chrX:42398959-42399141 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 59, 70 |
| Conread position: | 232-367 |
| Cow position: | chrX:10155011-10155142 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 232-408 |
| Cow position: | chrX:1751199-1751367 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 249-394 |
| Cow position: | chrX:277840-277987 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 132, 50 |
| Conread position: | 250-603 |
| Cow position: | chrX:21247819-21248167 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 33 |
| Conread position: | 258-755 |
| Cow position: | chrX:25257047-25257512 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 34 |
| Conread position: | 263-476 |
| Cow position: | chrX:28640621-28640408 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 118, 33 |
| Conread position: | 270-577 |
| Cow position: | chrX:25714152-25714466 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 29 |
| Conread position: | 270-579 |
| Cow position: | chrX:44664859-44665174 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 29 |
| Conread position: | 270-586 |
| Cow position: | chrX:35974113-35974432 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 29 |
| Conread position: | 273-502 |
| Cow position: | chrX:40447095-40446855 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 101, 26 |
| Conread position: | 286-605 |
| Cow position: | chrX:26594657-26594977 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 13 |
| Conread position: | 299-578 |
| Cow position: | chrX:31140350-31140078 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 7 |
| Conread position: | 321-572 |
| Cow position: | chrX:26130322-26130062 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 17, 13 |
| Conread position: | 321-752 |
| Cow position: | chrX:18968518-18968947 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 321-752 |
| Cow position: | chrX:19121682-19121255 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 95 |
| Conread position: | 321-755 |
| Cow position: | chrX:26592170-26592606 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 13 |
| Conread position: | 336-755 |
| Cow position: | chrX:113944-114370 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 382 |
| Conread position: | 364-604 |
| Cow position: | chrX:5890080-5889840 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 15, 77 |
| Conread position: | 371-755 |
| Cow position: | chrX:277995-278384 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 42 |
| Conread position: | 375-755 |
| Cow position: | chrX:1751383-1751761 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 40 |
| Conread position: | 378-707 |
| Cow position: | chrX:13592578-13592260 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 379-755 |
| Cow position: | chrX:25950130-25949754 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 36 |
| Conread position: | 426-755 |
| Cow position: | chrX:29917380-29917045 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 59 |
| Conread position: | 481-756 |
| Cow position: | chrX:41754692-41754968 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 82 |
| Conread position: | 519-755 |
| Cow position: | chrX:18960101-18959887 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 596-747 |
| Cow position: | chrX:39266371-39266521 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 605-755 |
| Cow position: | chrX:21248284-21248436 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
Show alignments to all cow chromosomes.