Cow genome map

Conread name: Ss1.1-rplun0130_c23.5

Conread position: 122-308
Cow position: chr12:18421089-18420901 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 18, 63

Conread position: 122-353
Cow position: chr12:19507466-19507703 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 164
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 122-365
Cow position: chr12:29770739-29770501 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 170
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 19, 87

Conread position: 132-381
Cow position: chr12:39486275-39486519 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 171
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 173, 39

Conread position: 134-376
Cow position: chr12:25561218-25561458 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 168
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 32, 17

Conread position: 134-384
Cow position: chr12:6410886-6410639 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 166
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 45, 7

Conread position: 139-368
Cow position: chr12:30745568-30745798 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 74, 136

Conread position: 143-380
Cow position: chr12:9767021-9766786 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 75, 29

Conread position: 146-363
Cow position: chr12:24032357-24032572 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 152
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 123, 67

Conread position: 146-378
Cow position: chr12:11056736-11056963 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 171
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 163, 15

Conread position: 156-366
Cow position: chr12:33319797-33319590 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 142
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 70, 24

Conread position: 160-319
Cow position: chr12:731062-730904 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 115
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 56, 9

Conread position: 160-319
Cow position: chr12:22285244-22285090 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 160-320
Cow position: chr12:20777048-20776891 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 64, 13

Conread position: 160-334
Cow position: chr12:44622229-44622395 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 65, 8

Conread position: 160-342
Cow position: chr12:30170543-30170724 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 121, 9

Conread position: 160-361
Cow position: chr12:5905929-5906130 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 142
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 66, 9

Conread position: 160-364
Cow position: chr12:31429695-31429495 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 66, 9

Conread position: 160-367
Cow position: chr12:47804029-47804236 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 144
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 67, 9

Conread position: 160-368
Cow position: chr12:46120955-46120752 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 116, 8

Conread position: 160-370
Cow position: chr12:7884807-7884600 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 144
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 160-370
Cow position: chr12:15122197-15122407 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 72, 12

Conread position: 160-370
Cow position: chr12:17269674-17269883 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 160
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 58, 9

Conread position: 160-370
Cow position: chr12:24116488-24116281 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 151
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 70, 13

Conread position: 160-370
Cow position: chr12:30605290-30605083 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 62, 13

Conread position: 160-370
Cow position: chr12:44733217-44733011 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 141
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 160-378
Cow position: chr12:37170068-37169856 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 166
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 9, 0

Conread position: 160-380
Cow position: chr12:15089389-15089608 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 55, 8

Conread position: 160-380
Cow position: chr12:18518542-18518764 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 167
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 53, 11

Conread position: 160-380
Cow position: chr12:26217951-26217732 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 149
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 51, 9

Conread position: 160-380
Cow position: chr12:37770751-37770959 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 61, 9

Conread position: 160-382
Cow position: chr12:45820493-45820273 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 168
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 57, 9

Conread position: 160-396
Cow position: chr12:17774669-17774905 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 165
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 43, 30

Conread position: 160-407
Cow position: chr12:15429720-15429480 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 168
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 238, 13

Conread position: 160-408
Cow position: chr12:16670140-16670384 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 181
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 66, 9

Conread position: 160-408
Cow position: chr12:19258154-19258394 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 176
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 48, 9

Conread position: 160-408
Cow position: chr12:24662991-24663235 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 170
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 160, 9

Conread position: 160-408
Cow position: chr12:25320797-25321037 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 169
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 204, 9

Conread position: 160-408
Cow position: chr12:41159469-41159705 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 170
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 162-397
Cow position: chr12:27037575-27037342 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 176
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 196, 0

Conread position: 164-303
Cow position: chr12:26317340-26317481 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 164-332
Cow position: chr12:18023556-18023380 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 51, 21

Conread position: 164-380
Cow position: chr12:5632004-5631792 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 160
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 55, 63

Conread position: 164-388
Cow position: chr12:36544772-36544543 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 167
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 43, 179

Conread position: 165-317
Cow position: chr12:35669594-35669440 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 55, 0

Conread position: 165-319
Cow position: chr12:19691355-19691202 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 51, 124

Conread position: 165-362
Cow position: chr12:39465455-39465654 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 138
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 47, 0

Conread position: 165-362
Cow position: chr12:42685068-42684870 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 137
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 59, 0

Conread position: 165-364
Cow position: chr12:17001141-17001335 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 136
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 165-370
Cow position: chr12:18766099-18765890 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 141
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 165-373
Cow position: chr12:17879426-17879216 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 17, 148

Conread position: 165-378
Cow position: chr12:18123559-18123758 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 52, 0

Conread position: 165-380
Cow position: chr12:6485334-6485121 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 53, 101

Conread position: 165-380
Cow position: chr12:31959766-31959970 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 165-398
Cow position: chr12:17031494-17031723 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 156
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 102, 0

Conread position: 165-408
Cow position: chr12:42879574-42879814 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 167
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 233, 18

Conread position: 165-408
Cow position: chr12:43942350-43942587 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 173
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 60, 159

Conread position: 166-397
Cow position: chr12:18020737-18020967 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 157
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 55, 31

Conread position: 166-397
Cow position: chr12:32714924-32715154 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 159
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 60, 96

Conread position: 170-370
Cow position: chr12:9143271-9143468 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 43, 23

Conread position: 171-354
Cow position: chr12:19502539-19502361 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 130
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 171-354
Cow position: chr12:32169426-32169607 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 53, 13

Conread position: 173-380
Cow position: chr12:33851245-33851450 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 142
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 41, 93

Conread position: 175-356
Cow position: chr12:18577727-18577909 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 145, 0

Conread position: 175-378
Cow position: chr12:18583104-18582904 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 151
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 40, 57

Conread position: 178-380
Cow position: chr12:3371652-3371455 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 39, 106

Conread position: 178-388
Cow position: chr12:30819131-30819348 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 11, 0

Conread position: 179-334
Cow position: chr12:6235176-6235336 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 184-319
Cow position: chr12:6469165-6469028 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 184-378
Cow position: chr12:7902905-7902711 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 86, 38

Conread position: 187-347
Cow position: chr12:25805230-25805072 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 33, 48

Conread position: 187-368
Cow position: chr12:37514382-37514203 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 39, 163

Conread position: 190-369
Cow position: chr12:19261097-19261275 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 30, 157

Conread position: 195-378
Cow position: chr12:26777283-26777102 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 21, 99

Conread position: 196-377
Cow position: chr12:5554426-5554246 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 21, 163

Conread position: 200-380
Cow position: chr12:45092361-45092541 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 127
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 164, 25

Conread position: 205-362
Cow position: chr12:23644887-23644728 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 206-378
Cow position: chr12:33948821-33948993 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 20, 154

Conread position: 207-380
Cow position: chr12:5839738-5839564 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 13, 154

Conread position: 208-379
Cow position: chr12:17252277-17252107 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 68, 0

Conread position: 210-354
Cow position: chr12:15641184-15641040 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 70, 13

Conread position: 214-380
Cow position: chr12:12232810-12232973 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 132
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 94, 73

Conread position: 216-378
Cow position: chr12:46464137-46463979 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 125, 7

Conread position: 220-375
Cow position: chr12:19274464-19274312 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 72, 0

Conread position: 225-383
Cow position: chr12:15260701-15260855 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 111, 0

Conread position: 242-380
Cow position: chr12:14986704-14986839 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 107, 0

Show alignments to all cow chromosomes.