Cow genome map
| Conread name: | Ss1.1-rplun0130_c23.5 |
| Conread position: | 122-372 |
| Cow position: | chr14:36254537-36254777 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 51, 19 |
| Conread position: | 122-397 |
| Cow position: | chr14:37131825-37131544 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 19, 242 |
| Conread position: | 129-380 |
| Cow position: | chr14:33791349-33791105 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 192 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 132-361 |
| Cow position: | chr14:9308388-9308160 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 8, 42 |
| Conread position: | 132-364 |
| Cow position: | chr14:18345572-18345801 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 132-368 |
| Cow position: | chr14:10078429-10078192 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 9, 82 |
| Conread position: | 132-373 |
| Cow position: | chr14:29632724-29632960 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 114 |
| Conread position: | 132-380 |
| Cow position: | chr14:13042918-13042670 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 42, 104 |
| Conread position: | 132-380 |
| Cow position: | chr14:20640465-20640717 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 150 |
| Conread position: | 132-382 |
| Cow position: | chr14:33714521-33714764 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 81, 39 |
| Conread position: | 132-408 |
| Cow position: | chr14:27848360-27848067 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 140-354 |
| Cow position: | chr14:39770082-39770290 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 7, 31 |
| Conread position: | 142-408 |
| Cow position: | chr14:24945343-24945608 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 146-308 |
| Cow position: | chr14:23080616-23080785 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 28, 85 |
| Conread position: | 146-347 |
| Cow position: | chr14:39778898-39778696 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 75, 23 |
| Conread position: | 146-372 |
| Cow position: | chr14:41211001-41210774 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 29, 74 |
| Conread position: | 146-380 |
| Cow position: | chr14:20110575-20110809 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 49, 216 |
| Conread position: | 146-408 |
| Cow position: | chr14:26433096-26433360 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 147-384 |
| Cow position: | chr14:27591807-27592049 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 25, 164 |
| Conread position: | 148-378 |
| Cow position: | chr14:4202951-4203185 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 160-334 |
| Cow position: | chr14:5633809-5633988 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 160-347 |
| Cow position: | chr14:29698229-29698417 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 160-361 |
| Cow position: | chr14:19618622-19618820 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 160-368 |
| Cow position: | chr14:16256895-16256684 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 56, 13 |
| Conread position: | 160-368 |
| Cow position: | chr14:19372470-19372264 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 55, 9 |
| Conread position: | 160-375 |
| Cow position: | chr14:19360023-19359805 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 160-376 |
| Cow position: | chr14:16549875-16550086 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 170, 9 |
| Conread position: | 160-376 |
| Cow position: | chr14:34199720-34199926 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 160-377 |
| Cow position: | chr14:19863304-19863518 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 195, 9 |
| Conread position: | 160-380 |
| Cow position: | chr14:48427202-48426984 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 160-382 |
| Cow position: | chr14:15054860-15055080 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 63, 17 |
| Conread position: | 160-384 |
| Cow position: | chr14:12634758-12634974 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 160-398 |
| Cow position: | chr14:8750204-8749972 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 61, 9 |
| Conread position: | 160-406 |
| Cow position: | chr14:15492725-15492479 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 55, 9 |
| Conread position: | 160-407 |
| Cow position: | chr14:28115057-28115299 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 150, 9 |
| Conread position: | 161-411 |
| Cow position: | chr14:25111628-25111382 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 164-306 |
| Cow position: | chr14:16524602-16524458 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 164-347 |
| Cow position: | chr14:15997634-15997821 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 164-361 |
| Cow position: | chr14:4877106-4877299 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 179, 55 |
| Conread position: | 165-354 |
| Cow position: | chr14:2038690-2038871 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 165-359 |
| Cow position: | chr14:39774924-39775120 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 62, 125 |
| Conread position: | 165-368 |
| Cow position: | chr14:4282383-4282581 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 165-374 |
| Cow position: | chr14:19189167-19188962 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 75, 31 |
| Conread position: | 165-379 |
| Cow position: | chr14:22989159-22988948 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 47, 61 |
| Conread position: | 165-382 |
| Cow position: | chr14:24608091-24607871 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 114 |
| Conread position: | 165-384 |
| Cow position: | chr14:48838720-48838502 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 166-369 |
| Cow position: | chr14:32371620-32371816 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 169-384 |
| Cow position: | chr14:41486139-41486351 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 49, 121 |
| Conread position: | 171-370 |
| Cow position: | chr14:47170233-47170430 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 171-387 |
| Cow position: | chr14:33300821-33300608 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 159, 47 |
| Conread position: | 172-362 |
| Cow position: | chr14:26442222-26442411 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 120 |
| Conread position: | 173-374 |
| Cow position: | chr14:42154847-42155055 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 173-396 |
| Cow position: | chr14:4991122-4990899 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 48, 125 |
| Conread position: | 175-370 |
| Cow position: | chr14:33751651-33751460 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 179-342 |
| Cow position: | chr14:42480108-42480268 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 39, 56 |
| Conread position: | 182-390 |
| Cow position: | chr14:16760510-16760301 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 28, 63 |
| Conread position: | 184-319 |
| Cow position: | chr14:2345175-2345039 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 184-367 |
| Cow position: | chr14:19959629-19959810 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 184-390 |
| Cow position: | chr14:25225837-25225631 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 32, 176 |
| Conread position: | 184-398 |
| Cow position: | chr14:5557013-5557227 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 33, 183 |
| Conread position: | 184-398 |
| Cow position: | chr14:41749655-41749867 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 211, 18 |
| Conread position: | 185-319 |
| Cow position: | chr14:3162833-3162699 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 185-369 |
| Cow position: | chr14:24796327-24796512 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 169, 148 |
| Conread position: | 186-380 |
| Cow position: | chr14:45677336-45677141 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 29, 74 |
| Conread position: | 187-364 |
| Cow position: | chr14:41837769-41837944 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 190-396 |
| Cow position: | chr14:34096471-34096668 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 123, 29 |
| Conread position: | 191-362 |
| Cow position: | chr14:19487387-19487224 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 196-364 |
| Cow position: | chr14:45576998-45577166 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 162, 27 |
| Conread position: | 199-348 |
| Cow position: | chr14:3779429-3779277 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 199-374 |
| Cow position: | chr14:25334150-25333977 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 202-376 |
| Cow position: | chr14:10852120-10851947 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 71 |
| Conread position: | 205-398 |
| Cow position: | chr14:16457603-16457413 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 209-370 |
| Cow position: | chr14:4848430-4848271 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 13, 61 |
| Conread position: | 209-380 |
| Cow position: | chr14:13846066-13845899 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 210-380 |
| Cow position: | chr14:20826569-20826401 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 158, 19 |
| Conread position: | 212-380 |
| Cow position: | chr14:29734285-29734452 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 213-380 |
| Cow position: | chr14:43868387-43868219 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 135, 97 |
| Conread position: | 215-372 |
| Cow position: | chr14:25903607-25903452 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 226-389 |
| Cow position: | chr14:18302026-18301864 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 114, 133 |
| Conread position: | 257-408 |
| Cow position: | chr14:47224332-47224483 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 141, 27 |
Show alignments to all cow chromosomes.