Cow genome map
| Conread name: | Ss1.1-rplun0130_c23.5 |
| Conread position: | 122-408 |
| Cow position: | chr24:10499062-10499347 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 20, 48 |
| Conread position: | 131-358 |
| Cow position: | chr24:27844667-27844443 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 81, 53 |
| Conread position: | 132-316 |
| Cow position: | chr24:28990420-28990604 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 40, 56 |
| Conread position: | 132-357 |
| Cow position: | chr24:19736473-19736249 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 83, 30 |
| Conread position: | 132-370 |
| Cow position: | chr24:24491154-24490923 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 132-370 |
| Cow position: | chr24:29063792-29063564 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 132-380 |
| Cow position: | chr24:5754694-5754940 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 46, 93 |
| Conread position: | 134-378 |
| Cow position: | chr24:31359186-31359424 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 140-347 |
| Cow position: | chr24:6132006-6131798 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 26, 42 |
| Conread position: | 144-306 |
| Cow position: | chr24:39833642-39833482 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 20, 70 |
| Conread position: | 144-407 |
| Cow position: | chr24:33944272-33944534 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 28, 16 |
| Conread position: | 146-340 |
| Cow position: | chr24:3430603-3430799 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 28, 131 |
| Conread position: | 146-372 |
| Cow position: | chr24:27713534-27713308 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 26, 205 |
| Conread position: | 147-369 |
| Cow position: | chr24:11887031-11887251 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 38, 143 |
| Conread position: | 154-398 |
| Cow position: | chr24:29561696-29561449 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 31, 70 |
| Conread position: | 159-306 |
| Cow position: | chr24:27608216-27608065 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 160-318 |
| Cow position: | chr24:33222053-33221895 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 66, 9 |
| Conread position: | 160-324 |
| Cow position: | chr24:211874-212038 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 50, 9 |
| Conread position: | 160-347 |
| Cow position: | chr24:27726126-27725938 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 55, 9 |
| Conread position: | 160-347 |
| Cow position: | chr24:31812077-31812263 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 56, 23 |
| Conread position: | 160-354 |
| Cow position: | chr24:31324171-31324365 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 9 |
| Conread position: | 160-362 |
| Cow position: | chr24:28233938-28234131 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 53, 9 |
| Conread position: | 160-367 |
| Cow position: | chr24:24662241-24662039 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 50, 9 |
| Conread position: | 160-368 |
| Cow position: | chr24:25885272-25885066 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 57, 9 |
| Conread position: | 160-368 |
| Cow position: | chr24:32095209-32095402 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 160-371 |
| Cow position: | chr24:3165705-3165917 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 68, 14 |
| Conread position: | 160-373 |
| Cow position: | chr24:24250617-24250822 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 160-378 |
| Cow position: | chr24:30314140-30313923 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 50, 8 |
| Conread position: | 160-380 |
| Cow position: | chr24:28496694-28496476 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 60, 8 |
| Conread position: | 160-380 |
| Cow position: | chr24:39523558-39523344 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 160-381 |
| Cow position: | chr24:18357165-18356946 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 61, 9 |
| Conread position: | 160-382 |
| Cow position: | chr24:39791428-39791647 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 160-390 |
| Cow position: | chr24:2402479-2402255 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 160-391 |
| Cow position: | chr24:23187032-23186799 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 63, 13 |
| Conread position: | 160-398 |
| Cow position: | chr24:33153666-33153900 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 160-407 |
| Cow position: | chr24:17104683-17104441 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 69, 9 |
| Conread position: | 160-407 |
| Cow position: | chr24:37650559-37650803 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 8, 14 |
| Conread position: | 162-356 |
| Cow position: | chr24:30897647-30897455 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 58, 12 |
| Conread position: | 164-346 |
| Cow position: | chr24:17860369-17860185 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 49, 163 |
| Conread position: | 164-358 |
| Cow position: | chr24:29679417-29679228 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 164-370 |
| Cow position: | chr24:15057293-15057493 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 166, 47 |
| Conread position: | 164-374 |
| Cow position: | chr24:1269684-1269883 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 164-378 |
| Cow position: | chr24:5141836-5142046 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 164-378 |
| Cow position: | chr24:37975089-37974878 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 58, 24 |
| Conread position: | 165-356 |
| Cow position: | chr24:35675438-35675629 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 155, 31 |
| Conread position: | 165-364 |
| Cow position: | chr24:15246751-15246552 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 52, 27 |
| Conread position: | 165-372 |
| Cow position: | chr24:37037790-37037999 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 51, 199 |
| Conread position: | 165-376 |
| Cow position: | chr24:20874573-20874786 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 55, 145 |
| Conread position: | 165-392 |
| Cow position: | chr24:19769380-19769612 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 165-408 |
| Cow position: | chr24:30235760-30236001 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 166-340 |
| Cow position: | chr24:36404250-36404077 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 60, 154 |
| Conread position: | 171-307 |
| Cow position: | chr24:6487816-6487950 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 117 |
| Conread position: | 171-386 |
| Cow position: | chr24:230175-230396 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 173-319 |
| Cow position: | chr24:30308656-30308507 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 173-419 |
| Cow position: | chr24:28042873-28043125 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 175-356 |
| Cow position: | chr24:24755346-24755530 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 178-380 |
| Cow position: | chr24:14457817-14457619 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 37, 76 |
| Conread position: | 178-398 |
| Cow position: | chr24:37823434-37823653 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 217, 40 |
| Conread position: | 178-407 |
| Cow position: | chr24:13948027-13948252 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 46, 111 |
| Conread position: | 179-376 |
| Cow position: | chr24:20364503-20364309 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 43, 19 |
| Conread position: | 183-408 |
| Cow position: | chr24:27284731-27284953 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 180, 82 |
| Conread position: | 184-372 |
| Cow position: | chr24:15288732-15288927 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 25, 155 |
| Conread position: | 184-372 |
| Cow position: | chr24:27349268-27349078 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 27, 111 |
| Conread position: | 184-380 |
| Cow position: | chr24:31816488-31816683 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 32, 175 |
| Conread position: | 184-382 |
| Cow position: | chr24:43028418-43028220 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 185-304 |
| Cow position: | chr24:28303454-28303334 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 185-380 |
| Cow position: | chr24:17311306-17311118 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 33, 93 |
| Conread position: | 185-408 |
| Cow position: | chr24:6912455-6912226 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 190-363 |
| Cow position: | chr24:44145497-44145667 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 99 |
| Conread position: | 192-364 |
| Cow position: | chr24:28319292-28319118 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 193-380 |
| Cow position: | chr24:18474808-18474623 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 208-396 |
| Cow position: | chr24:43200333-43200153 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 213-398 |
| Cow position: | chr24:5360660-5360840 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 182, 9 |
| Conread position: | 216-385 |
| Cow position: | chr24:28689608-28689778 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 220-378 |
| Cow position: | chr24:22133118-22133274 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 220-380 |
| Cow position: | chr24:17375585-17375742 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 140, 0 |
Show alignments to all cow chromosomes.