Cow genome map

Conread name: Ss1.1-rplun0130_c23.5

Conread position: 122-310
Cow position: chr25:7449678-7449859 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 44, 92

Conread position: 122-345
Cow position: chr25:11436936-11436713 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 155
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 70, 19

Conread position: 123-382
Cow position: chr25:21668117-21668378 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 173
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 18, 239

Conread position: 124-347
Cow position: chr25:23829263-23829033 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 155
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 23, 131

Conread position: 132-354
Cow position: chr25:12609223-12609443 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 83, 156

Conread position: 132-366
Cow position: chr25:8120659-8120898 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 167
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 42, 68

Conread position: 132-368
Cow position: chr25:6683184-6682946 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 169
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 21, 229

Conread position: 132-372
Cow position: chr25:18721236-18720999 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 168
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 88, 31

Conread position: 135-362
Cow position: chr25:7641570-7641339 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 163
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 16, 124

Conread position: 136-408
Cow position: chr25:36872246-36872514 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 184
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 5, 73

Conread position: 137-370
Cow position: chr25:19129741-19129972 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 156
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 52, 36

Conread position: 139-317
Cow position: chr25:11051418-11051595 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 75, 30

Conread position: 139-376
Cow position: chr25:11433065-11432818 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 180
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 27, 0

Conread position: 141-370
Cow position: chr25:4947854-4948079 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 164
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 25, 17

Conread position: 141-395
Cow position: chr25:22315090-22315349 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 167
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 70, 0

Conread position: 144-386
Cow position: chr25:16921900-16921663 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 158
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 146-368
Cow position: chr25:22531177-22531396 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 164
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 72, 122

Conread position: 146-408
Cow position: chr25:7799451-7799705 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 193
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 219, 16

Conread position: 154-408
Cow position: chr25:5846905-5846654 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 169
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 73

Conread position: 156-362
Cow position: chr25:15254431-15254237 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 85, 27

Conread position: 159-370
Cow position: chr25:13272472-13272687 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 150
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 19, 75

Conread position: 160-311
Cow position: chr25:26642495-26642647 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 64, 9

Conread position: 160-315
Cow position: chr25:7035466-7035620 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 160-319
Cow position: chr25:24051874-24052034 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 51, 9

Conread position: 160-334
Cow position: chr25:14118004-14118174 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 57, 9

Conread position: 160-347
Cow position: chr25:36036869-36036683 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 66, 9

Conread position: 160-355
Cow position: chr25:4547805-4547614 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 133
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 160-363
Cow position: chr25:21893247-21893449 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 67, 9

Conread position: 160-364
Cow position: chr25:6961243-6961040 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 56, 9

Conread position: 160-364
Cow position: chr25:25051469-25051264 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 142
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 68, 13

Conread position: 160-367
Cow position: chr25:14157532-14157740 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 148
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 77, 9

Conread position: 160-370
Cow position: chr25:36555778-36555570 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 143
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 160-378
Cow position: chr25:4521928-4521713 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 11, 65

Conread position: 160-380
Cow position: chr25:19364149-19363932 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 163
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 9, 0

Conread position: 160-380
Cow position: chr25:41151049-41150836 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 151
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 179, 12

Conread position: 160-382
Cow position: chr25:26679139-26679355 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 9, 0

Conread position: 160-397
Cow position: chr25:9843087-9843320 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 175
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 65, 9

Conread position: 160-398
Cow position: chr25:23245091-23244853 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 172
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 204, 13

Conread position: 160-408
Cow position: chr25:20008046-20008285 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 166
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 117, 9

Conread position: 162-368
Cow position: chr25:4681143-4681343 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 54, 73

Conread position: 162-397
Cow position: chr25:10949671-10949433 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 177
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 6, 130

Conread position: 164-374
Cow position: chr25:22178835-22179037 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 164-382
Cow position: chr25:15714787-15715002 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 161
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 156, 32

Conread position: 164-396
Cow position: chr25:36120416-36120641 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 163
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 52

Conread position: 164-408
Cow position: chr25:7673204-7673457 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 171
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 38, 204

Conread position: 164-419
Cow position: chr25:13566876-13567138 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 176
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 51, 242

Conread position: 165-361
Cow position: chr25:12510096-12509901 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 57, 0

Conread position: 165-361
Cow position: chr25:19679259-19679464 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 46, 194

Conread position: 165-362
Cow position: chr25:34169863-34170057 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 12, 0

Conread position: 165-373
Cow position: chr25:27531359-27531151 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 72, 186

Conread position: 165-376
Cow position: chr25:7750365-7750577 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 165-378
Cow position: chr25:13621444-13621234 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 47, 121

Conread position: 165-378
Cow position: chr25:24572984-24573192 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 144
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 165-390
Cow position: chr25:5920856-5921085 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 153
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 165-398
Cow position: chr25:23745172-23745404 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 157
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 48, 195

Conread position: 165-405
Cow position: chr25:20785670-20785438 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 170
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 48, 0

Conread position: 165-408
Cow position: chr25:7007824-7008071 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 169
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 62, 193

Conread position: 165-418
Cow position: chr25:30279295-30279042 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 173
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 55, 218

Conread position: 166-372
Cow position: chr25:21191403-21191607 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 52, 191

Conread position: 166-374
Cow position: chr25:33457646-33457853 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 53, 193

Conread position: 166-380
Cow position: chr25:30618980-30619190 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 145
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 171-370
Cow position: chr25:11661895-11661699 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 136
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 174, 52

Conread position: 171-380
Cow position: chr25:3992704-3992908 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 146
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 51, 116

Conread position: 172-415
Cow position: chr25:40931197-40931435 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 172
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 46, 27

Conread position: 173-347
Cow position: chr25:14809203-14809369 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 173-384
Cow position: chr25:23504970-23505185 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 35, 0

Conread position: 174-356
Cow position: chr25:14720670-14720849 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 39, 0

Conread position: 174-378
Cow position: chr25:33550432-33550639 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 125, 154

Conread position: 175-354
Cow position: chr25:19478597-19478778 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 6, 0

Conread position: 175-368
Cow position: chr25:12117077-12116882 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 133
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 175-368
Cow position: chr25:35826363-35826166 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 139
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 189

Conread position: 175-368
Cow position: chr25:38957886-38958070 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 136
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 87, 0

Conread position: 179-347
Cow position: chr25:13767898-13768066 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 39, 132

Conread position: 183-378
Cow position: chr25:1840254-1840449 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 31, 177

Conread position: 184-362
Cow position: chr25:7379216-7379036 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 128
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 34, 12

Conread position: 184-362
Cow position: chr25:15273607-15273784 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 38, 0

Conread position: 184-370
Cow position: chr25:11276486-11276669 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 130
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 180, 35

Conread position: 184-374
Cow position: chr25:20023455-20023265 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 133
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 32, 176

Conread position: 184-378
Cow position: chr25:7012362-7012552 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 138
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 155, 28

Conread position: 184-380
Cow position: chr25:2624741-2624922 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 184-397
Cow position: chr25:22261364-22261171 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 184-408
Cow position: chr25:26306272-26306052 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 32, 143

Conread position: 185-319
Cow position: chr25:6226971-6227103 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 185-334
Cow position: chr25:16319208-16319057 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 27, 0

Conread position: 185-355
Cow position: chr25:36019733-36019565 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 31, 109

Conread position: 185-368
Cow position: chr25:6134157-6133976 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 37, 113

Conread position: 185-370
Cow position: chr25:17190809-17190630 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 33, 11

Conread position: 188-380
Cow position: chr25:40682676-40682867 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 133
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 158, 25

Conread position: 206-370
Cow position: chr25:18810297-18810464 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 15, 0

Conread position: 206-385
Cow position: chr25:26238813-26238995 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 70, 156

Conread position: 207-408
Cow position: chr25:22348507-22348307 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 191, 147

Conread position: 208-368
Cow position: chr25:28597655-28597495 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 68, 152

Conread position: 208-380
Cow position: chr25:35339232-35339062 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 122
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 93, 17

Conread position: 214-347
Cow position: chr25:9107560-9107428 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 216-380
Cow position: chr25:13222865-13223026 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 133, 0

Conread position: 220-382
Cow position: chr25:9990141-9989984 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 136, 0

Conread position: 226-394
Cow position: chr25:15463562-15463728 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 120, 0

Conread position: 234-408
Cow position: chr25:3744762-3744586 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 123
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 134, 0

Conread position: 247-368
Cow position: chr25:34967513-34967394 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 72, 76

Show alignments to all cow chromosomes.