Cow genome map

Conread name: Ss1.1-rplun0130_c23.5

Conread position: 121-370
Cow position: chr27:16478255-16478501 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 169
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 51, 149

Conread position: 122-315
Cow position: chr27:30890371-30890181 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 19, 93

Conread position: 122-370
Cow position: chr27:15454295-15454048 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 180
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 88, 21

Conread position: 122-370
Cow position: chr27:22035293-22035543 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 171
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 57, 19

Conread position: 122-380
Cow position: chr27:20481293-20481532 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 57, 19

Conread position: 122-380
Cow position: chr27:26239109-26238850 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 177
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 67, 19

Conread position: 122-390
Cow position: chr27:19685627-19685896 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 198
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 52, 29

Conread position: 122-397
Cow position: chr27:21669039-21669307 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 191
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 273, 19

Conread position: 123-406
Cow position: chr27:27388940-27389222 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 190
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 109, 18

Conread position: 131-347
Cow position: chr27:1498394-1498173 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 153
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 43, 164

Conread position: 132-326
Cow position: chr27:23511066-23510866 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 42, 175

Conread position: 132-357
Cow position: chr27:20092762-20092986 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 160
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 80, 31

Conread position: 132-376
Cow position: chr27:27632534-27632769 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 74, 0

Conread position: 132-377
Cow position: chr27:4673095-4672842 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 188
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 49, 236

Conread position: 134-330
Cow position: chr27:21976120-21975928 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 136
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 65

Conread position: 134-354
Cow position: chr27:19388086-19387870 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 7, 67

Conread position: 139-334
Cow position: chr27:16625964-16625771 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 27, 144

Conread position: 140-372
Cow position: chr27:22220621-22220386 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 157
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 32, 0

Conread position: 143-357
Cow position: chr27:8353535-8353327 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 76, 0

Conread position: 144-363
Cow position: chr27:20812969-20812747 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 38, 27

Conread position: 146-378
Cow position: chr27:26643742-26643519 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 161
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 75, 37

Conread position: 154-306
Cow position: chr27:24306882-24306728 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 18, 138

Conread position: 154-408
Cow position: chr27:23890990-23890736 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 166
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 18, 71

Conread position: 159-318
Cow position: chr27:4829755-4829924 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 7, 162

Conread position: 159-380
Cow position: chr27:26959574-26959788 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 153
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 157, 10

Conread position: 159-382
Cow position: chr27:20629109-20628902 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 165
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 12, 62

Conread position: 160-310
Cow position: chr27:20789334-20789484 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 60, 9

Conread position: 160-317
Cow position: chr27:815409-815250 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 67, 9

Conread position: 160-319
Cow position: chr27:4812837-4812997 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 61, 9

Conread position: 160-347
Cow position: chr27:20549665-20549853 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 53, 14

Conread position: 160-347
Cow position: chr27:23483270-23483085 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 57, 9

Conread position: 160-354
Cow position: chr27:1123074-1122883 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 12, 0

Conread position: 160-368
Cow position: chr27:16103852-16103651 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 153
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 123, 0

Conread position: 160-369
Cow position: chr27:23452502-23452300 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 153
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 9, 0

Conread position: 160-370
Cow position: chr27:29504603-29504812 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 147
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 67, 9

Conread position: 160-373
Cow position: chr27:22171343-22171134 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 69, 9

Conread position: 160-376
Cow position: chr27:23485256-23485044 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 157
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 61, 9

Conread position: 160-377
Cow position: chr27:22418724-22418937 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 150
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 9

Conread position: 160-378
Cow position: chr27:17397408-17397625 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 160
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 57, 9

Conread position: 160-382
Cow position: chr27:435278-435058 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 156
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 39, 9

Conread position: 160-383
Cow position: chr27:26999376-26999597 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 154
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 8, 186

Conread position: 160-386
Cow position: chr27:28271108-28271329 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 149
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 160-395
Cow position: chr27:14670341-14670571 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 164
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 8, 50

Conread position: 160-397
Cow position: chr27:15215276-15215037 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 161
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 57, 9

Conread position: 161-365
Cow position: chr27:24321228-24321030 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 11, 0

Conread position: 164-334
Cow position: chr27:8405785-8405951 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 57, 0

Conread position: 164-374
Cow position: chr27:20828669-20828877 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 143
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 56, 9

Conread position: 164-375
Cow position: chr27:299339-299548 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 147
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 31, 57

Conread position: 164-376
Cow position: chr27:26407125-26407322 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 70, 0

Conread position: 164-394
Cow position: chr27:20795833-20795606 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 160
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 52, 125

Conread position: 164-396
Cow position: chr27:18767020-18767248 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 171
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 15, 83

Conread position: 165-333
Cow position: chr27:30551036-30550862 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 165-372
Cow position: chr27:15408995-15409201 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 50, 194

Conread position: 165-408
Cow position: chr27:27694732-27694972 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 169
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 230, 123

Conread position: 165-419
Cow position: chr27:7212672-7212929 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 176
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 55, 185

Conread position: 166-355
Cow position: chr27:3934-3747 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 52, 17

Conread position: 166-367
Cow position: chr27:23107863-23108062 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 50, 106

Conread position: 166-382
Cow position: chr27:29593590-29593805 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 145
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 119, 0

Conread position: 166-382
Cow position: chr27:30406999-30407211 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 63, 37

Conread position: 168-319
Cow position: chr27:23472292-23472145 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 168-382
Cow position: chr27:23594356-23594147 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 149
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 152, 9

Conread position: 169-361
Cow position: chr27:20641296-20641489 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 21, 60

Conread position: 169-390
Cow position: chr27:20517694-20517481 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 16, 28

Conread position: 171-365
Cow position: chr27:23559997-23560190 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 45, 54

Conread position: 172-378
Cow position: chr27:427000-426796 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 193, 26

Conread position: 175-347
Cow position: chr27:24014710-24014881 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 45, 15

Conread position: 178-347
Cow position: chr27:16284503-16284334 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 52, 166

Conread position: 178-380
Cow position: chr27:20067950-20068148 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 51, 20

Conread position: 179-380
Cow position: chr27:29597725-29597921 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 142
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 42, 11

Conread position: 184-319
Cow position: chr27:4835583-4835720 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 185-355
Cow position: chr27:26151042-26150868 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 185-379
Cow position: chr27:12459304-12459117 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 50, 34

Conread position: 185-408
Cow position: chr27:12425308-12425091 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 83, 33

Conread position: 186-419
Cow position: chr27:237288-237053 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 166
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 189, 124

Conread position: 189-386
Cow position: chr27:19509030-19508834 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 145
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 31, 170

Conread position: 192-370
Cow position: chr27:28478594-28478417 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 28, 165

Conread position: 193-370
Cow position: chr27:31210559-31210386 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 23, 51

Conread position: 206-374
Cow position: chr27:27055285-27055122 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 81, 0

Conread position: 215-379
Cow position: chr27:7412383-7412221 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 143, 0

Conread position: 219-370
Cow position: chr27:6106684-6106540 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 219-397
Cow position: chr27:16589716-16589892 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 125
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 136, 0

Conread position: 219-420
Cow position: chr27:30489424-30489622 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 137
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 139, 0

Conread position: 221-361
Cow position: chr27:7343444-7343584 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 99, 123

Conread position: 221-380
Cow position: chr27:15002994-15003153 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 223-381
Cow position: chr27:22179787-22179940 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 228-362
Cow position: chr27:788820-788953 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 101
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 121, 0

Conread position: 240-397
Cow position: chr27:11466500-11466653 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 109, 0

Conread position: 278-407
Cow position: chr27:31183503-31183375 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 120, 80

Show alignments to all cow chromosomes.