Cow genome map
| Conread name: | Ss1.1-rplun0130_c23.5 |
| Conread position: | 117-408 |
| Cow position: | chr29:34359116-34358825 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 61, 245 |
| Conread position: | 122-358 |
| Cow position: | chr29:45005754-45005522 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 89, 19 |
| Conread position: | 122-370 |
| Cow position: | chr29:1556803-1557048 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 132-408 |
| Cow position: | chr29:5892727-5893001 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 88, 31 |
| Conread position: | 137-374 |
| Cow position: | chr29:26559351-26559123 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 193, 23 |
| Conread position: | 142-362 |
| Cow position: | chr29:17607308-17607527 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 16, 28 |
| Conread position: | 143-345 |
| Cow position: | chr29:26778770-26778976 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 36, 129 |
| Conread position: | 143-397 |
| Cow position: | chr29:32290501-32290754 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 81 |
| Conread position: | 146-319 |
| Cow position: | chr29:40166139-40166312 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 79, 35 |
| Conread position: | 146-382 |
| Cow position: | chr29:10058643-10058409 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 70, 145 |
| Conread position: | 146-407 |
| Cow position: | chr29:19949199-19949461 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 54, 23 |
| Conread position: | 147-378 |
| Cow position: | chr29:20770242-20770469 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 72, 15 |
| Conread position: | 154-324 |
| Cow position: | chr29:22714820-22714650 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 106 |
| Conread position: | 155-347 |
| Cow position: | chr29:18012462-18012654 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 61, 16 |
| Conread position: | 157-382 |
| Cow position: | chr29:19762180-19762397 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 160-315 |
| Cow position: | chr29:31674542-31674697 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 53, 9 |
| Conread position: | 160-317 |
| Cow position: | chr29:29314743-29314586 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 60, 9 |
| Conread position: | 160-319 |
| Cow position: | chr29:26615810-26615652 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 160-334 |
| Cow position: | chr29:11562527-11562696 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 160-334 |
| Cow position: | chr29:24578770-24578946 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 32, 9 |
| Conread position: | 160-361 |
| Cow position: | chr29:29769439-29769241 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 9 |
| Conread position: | 160-367 |
| Cow position: | chr29:22613338-22613541 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 8 |
| Conread position: | 160-370 |
| Cow position: | chr29:18085482-18085691 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 60, 12 |
| Conread position: | 160-370 |
| Cow position: | chr29:39111403-39111195 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 61, 9 |
| Conread position: | 160-376 |
| Cow position: | chr29:21665999-21666213 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 197, 9 |
| Conread position: | 160-378 |
| Cow position: | chr29:34773822-34773610 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 170, 9 |
| Conread position: | 160-380 |
| Cow position: | chr29:9709607-9709823 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 96, 9 |
| Conread position: | 160-380 |
| Cow position: | chr29:43099835-43099618 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 160-390 |
| Cow position: | chr29:27588835-27589060 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 57, 9 |
| Conread position: | 160-395 |
| Cow position: | chr29:25333550-25333317 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 160-397 |
| Cow position: | chr29:23243968-23243734 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 160-398 |
| Cow position: | chr29:40117480-40117717 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 25, 9 |
| Conread position: | 160-406 |
| Cow position: | chr29:41530759-41531001 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 61, 9 |
| Conread position: | 162-372 |
| Cow position: | chr29:41811675-41811469 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 164-316 |
| Cow position: | chr29:24103630-24103476 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 164-347 |
| Cow position: | chr29:23984043-23983859 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 164-363 |
| Cow position: | chr29:4874973-4874769 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 164 |
| Conread position: | 164-367 |
| Cow position: | chr29:463743-463536 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 164-398 |
| Cow position: | chr29:11647004-11647241 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 87 |
| Conread position: | 164-408 |
| Cow position: | chr29:12680073-12680310 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 234, 48 |
| Conread position: | 164-419 |
| Cow position: | chr29:40873925-40874182 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 56, 13 |
| Conread position: | 165-319 |
| Cow position: | chr29:25092028-25092174 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 56, 29 |
| Conread position: | 165-341 |
| Cow position: | chr29:27329808-27329982 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 17, 23 |
| Conread position: | 165-345 |
| Cow position: | chr29:22162337-22162155 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 165-347 |
| Cow position: | chr29:35501735-35501558 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 165-362 |
| Cow position: | chr29:29176699-29176506 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 165, 43 |
| Conread position: | 165-376 |
| Cow position: | chr29:5063063-5063272 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 190, 58 |
| Conread position: | 165-377 |
| Cow position: | chr29:36217033-36217236 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 165-391 |
| Cow position: | chr29:4480256-4480033 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 165-419 |
| Cow position: | chr29:8926547-8926293 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 62, 13 |
| Conread position: | 166-369 |
| Cow position: | chr29:5186579-5186375 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 46, 9 |
| Conread position: | 166-390 |
| Cow position: | chr29:36530784-36531005 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 33, 18 |
| Conread position: | 173-358 |
| Cow position: | chr29:30548697-30548883 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 173-364 |
| Cow position: | chr29:25737494-25737301 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 173-390 |
| Cow position: | chr29:28840077-28840293 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 41, 186 |
| Conread position: | 173-407 |
| Cow position: | chr29:20167346-20167578 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 157, 153 |
| Conread position: | 174-397 |
| Cow position: | chr29:23220577-23220356 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 146 |
| Conread position: | 183-374 |
| Cow position: | chr29:41112941-41112760 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 184-317 |
| Cow position: | chr29:27846398-27846530 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 184-368 |
| Cow position: | chr29:23825286-23825093 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 184-370 |
| Cow position: | chr29:38980136-38979958 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 90, 35 |
| Conread position: | 184-380 |
| Cow position: | chr29:38978464-38978660 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 155 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 28, 133 |
| Conread position: | 184-403 |
| Cow position: | chr29:44139311-44139093 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 42, 130 |
| Conread position: | 185-319 |
| Cow position: | chr29:31943800-31943934 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 189-318 |
| Cow position: | chr29:31477177-31477046 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 29, 42 |
| Conread position: | 190-370 |
| Cow position: | chr29:4002829-4003009 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 23, 170 |
| Conread position: | 196-354 |
| Cow position: | chr29:23155174-23155329 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 211-368 |
| Cow position: | chr29:22735144-22734992 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 218-390 |
| Cow position: | chr29:32197664-32197833 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 110, 102 |
| Conread position: | 219-382 |
| Cow position: | chr29:39038301-39038138 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 226-379 |
| Cow position: | chr29:22723576-22723727 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 228-362 |
| Cow position: | chr29:7290753-7290887 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.