Cow genome map
| Conread name: | Ss1.1-rplun0130_c23.5 |
| Conread position: | 118-384 |
| Cow position: | chr3:79196603-79196871 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 7, 69 |
| Conread position: | 122-339 |
| Cow position: | chr3:53790688-53790471 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 19, 50 |
| Conread position: | 122-347 |
| Cow position: | chr3:45534447-45534222 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 19, 115 |
| Conread position: | 122-354 |
| Cow position: | chr3:79094199-79093962 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 50 |
| Conread position: | 122-369 |
| Cow position: | chr3:62826770-62826523 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 19, 54 |
| Conread position: | 122-369 |
| Cow position: | chr3:75479851-75480094 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 57 |
| Conread position: | 122-380 |
| Cow position: | chr3:49327790-49328051 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 122-380 |
| Cow position: | chr3:74234045-74234291 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 122-397 |
| Cow position: | chr3:70899744-70900012 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 19, 49 |
| Conread position: | 122-408 |
| Cow position: | chr3:71231244-71231527 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 98 |
| Conread position: | 123-376 |
| Cow position: | chr3:55835975-55835719 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 18, 237 |
| Conread position: | 127-380 |
| Cow position: | chr3:78093530-78093284 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 131-362 |
| Cow position: | chr3:17447753-17447526 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 60, 87 |
| Conread position: | 132-345 |
| Cow position: | chr3:70895907-70896120 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 141, 81 |
| Conread position: | 132-347 |
| Cow position: | chr3:17936978-17936765 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 90, 40 |
| Conread position: | 132-382 |
| Cow position: | chr3:50768539-50768787 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 40, 84 |
| Conread position: | 132-399 |
| Cow position: | chr3:70609483-70609751 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 42, 163 |
| Conread position: | 132-403 |
| Cow position: | chr3:19585718-19585993 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 41, 162 |
| Conread position: | 132-406 |
| Cow position: | chr3:70565881-70565607 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 89 |
| Conread position: | 141-314 |
| Cow position: | chr3:44625295-44625122 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 142-354 |
| Cow position: | chr3:74533218-74533430 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 26, 82 |
| Conread position: | 143-370 |
| Cow position: | chr3:54290642-54290415 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 78, 29 |
| Conread position: | 146-374 |
| Cow position: | chr3:53508492-53508710 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 146-378 |
| Cow position: | chr3:15153563-15153794 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 82, 52 |
| Conread position: | 146-380 |
| Cow position: | chr3:52608058-52608287 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 71, 28 |
| Conread position: | 146-380 |
| Cow position: | chr3:75080641-75080865 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 26, 78 |
| Conread position: | 146-397 |
| Cow position: | chr3:15506322-15506575 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 189 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 70, 37 |
| Conread position: | 146-398 |
| Cow position: | chr3:6520099-6519846 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 8, 26 |
| Conread position: | 146-398 |
| Cow position: | chr3:13507337-13507591 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 28, 219 |
| Conread position: | 147-397 |
| Cow position: | chr3:17935063-17934813 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 221, 40 |
| Conread position: | 151-347 |
| Cow position: | chr3:9641446-9641642 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 79, 22 |
| Conread position: | 151-382 |
| Cow position: | chr3:73395002-73395223 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 154-380 |
| Cow position: | chr3:59604729-59604948 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 154-381 |
| Cow position: | chr3:67704424-67704652 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 204 |
| Conread position: | 155-361 |
| Cow position: | chr3:28908320-28908115 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 156-319 |
| Cow position: | chr3:46108696-46108864 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 111 |
| Conread position: | 157-380 |
| Cow position: | chr3:78077075-78077296 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 158, 53 |
| Conread position: | 160-313 |
| Cow position: | chr3:15954197-15954045 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 160-318 |
| Cow position: | chr3:1785352-1785200 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 160-322 |
| Cow position: | chr3:81277809-81277643 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 139, 12 |
| Conread position: | 160-334 |
| Cow position: | chr3:5097096-5097268 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 160-334 |
| Cow position: | chr3:68881222-68881060 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 160-344 |
| Cow position: | chr3:11711851-11712036 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 9 |
| Conread position: | 160-347 |
| Cow position: | chr3:23169176-23168992 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 63, 9 |
| Conread position: | 160-352 |
| Cow position: | chr3:22232762-22232575 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 50, 9 |
| Conread position: | 160-352 |
| Cow position: | chr3:63177368-63177562 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 58, 9 |
| Conread position: | 160-361 |
| Cow position: | chr3:10347245-10347443 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 159, 9 |
| Conread position: | 160-361 |
| Cow position: | chr3:73237084-73237284 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 160-361 |
| Cow position: | chr3:76922773-76922575 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 160-362 |
| Cow position: | chr3:12705656-12705455 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 55, 9 |
| Conread position: | 160-367 |
| Cow position: | chr3:26874482-26874684 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 55, 12 |
| Conread position: | 160-368 |
| Cow position: | chr3:13353251-13353457 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 160-368 |
| Cow position: | chr3:20677945-20677749 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 160-368 |
| Cow position: | chr3:26219162-26218960 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 160-368 |
| Cow position: | chr3:39969978-39969769 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 160-368 |
| Cow position: | chr3:53150218-53150424 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 108, 9 |
| Conread position: | 160-368 |
| Cow position: | chr3:57624354-57624557 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 160-370 |
| Cow position: | chr3:23105476-23105265 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 57, 9 |
| Conread position: | 160-370 |
| Cow position: | chr3:48072993-48072787 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 160-372 |
| Cow position: | chr3:4461601-4461383 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 160-372 |
| Cow position: | chr3:18686797-18687005 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 160-372 |
| Cow position: | chr3:55272157-55271948 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 160-376 |
| Cow position: | chr3:3883929-3883714 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 53, 8 |
| Conread position: | 160-376 |
| Cow position: | chr3:8061017-8061230 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 160-376 |
| Cow position: | chr3:80564853-80565070 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 160-377 |
| Cow position: | chr3:53221904-53222115 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 112, 9 |
| Conread position: | 160-378 |
| Cow position: | chr3:30179971-30180189 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 55, 9 |
| Conread position: | 160-380 |
| Cow position: | chr3:27274419-27274633 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 57, 9 |
| Conread position: | 160-380 |
| Cow position: | chr3:38864005-38864232 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 160-380 |
| Cow position: | chr3:68708114-68707906 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 182, 8 |
| Conread position: | 160-382 |
| Cow position: | chr3:44932402-44932620 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 57, 9 |
| Conread position: | 160-386 |
| Cow position: | chr3:3738377-3738592 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 160-393 |
| Cow position: | chr3:32585043-32585268 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 160-397 |
| Cow position: | chr3:73443197-73442974 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 160-397 |
| Cow position: | chr3:74878699-74878462 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 160, 9 |
| Conread position: | 160-408 |
| Cow position: | chr3:2674918-2675161 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 160-408 |
| Cow position: | chr3:15443840-15443597 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 160-408 |
| Cow position: | chr3:68156624-68156857 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 141, 9 |
| Conread position: | 161-399 |
| Cow position: | chr3:68627797-68627562 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 55, 76 |
| Conread position: | 162-369 |
| Cow position: | chr3:82019952-82019745 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 48, 198 |
| Conread position: | 162-382 |
| Cow position: | chr3:10958353-10958133 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 10, 199 |
| Conread position: | 162-390 |
| Cow position: | chr3:26681913-26681699 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 53, 100 |
| Conread position: | 162-396 |
| Cow position: | chr3:74242884-74243113 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 53, 109 |
| Conread position: | 163-408 |
| Cow position: | chr3:1036918-1037157 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 235, 61 |
| Conread position: | 164-347 |
| Cow position: | chr3:50069657-50069837 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 156, 24 |
| Conread position: | 164-362 |
| Cow position: | chr3:116085-116279 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 162, 55 |
| Conread position: | 164-368 |
| Cow position: | chr3:23408459-23408265 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 164-368 |
| Cow position: | chr3:73460856-73461059 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 54, 148 |
| Conread position: | 164-374 |
| Cow position: | chr3:61224854-61224643 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 57, 26 |
| Conread position: | 164-378 |
| Cow position: | chr3:15951019-15950812 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 164-380 |
| Cow position: | chr3:59610828-59610612 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 54, 32 |
| Conread position: | 164-408 |
| Cow position: | chr3:32409104-32409349 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 192, 9 |
| Conread position: | 165-330 |
| Cow position: | chr3:65019972-65019808 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 165-338 |
| Cow position: | chr3:71161689-71161864 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 41, 112 |
| Conread position: | 165-347 |
| Cow position: | chr3:58969006-58968829 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 165-361 |
| Cow position: | chr3:54506597-54506795 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 165-362 |
| Cow position: | chr3:68616433-68616241 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 165-364 |
| Cow position: | chr3:83815896-83815697 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 45, 60 |
| Conread position: | 165-368 |
| Cow position: | chr3:60264824-60264623 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 58, 47 |
| Conread position: | 165-369 |
| Cow position: | chr3:70762229-70762027 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 75 |
| Conread position: | 165-374 |
| Cow position: | chr3:76268085-76267876 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 49, 173 |
| Conread position: | 165-376 |
| Cow position: | chr3:17331620-17331826 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 55, 95 |
| Conread position: | 165-376 |
| Cow position: | chr3:54946022-54946234 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 64, 161 |
| Conread position: | 165-376 |
| Cow position: | chr3:55177857-55177645 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 50, 196 |
| Conread position: | 165-378 |
| Cow position: | chr3:55983988-55984201 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 52, 140 |
| Conread position: | 165-382 |
| Cow position: | chr3:12712024-12711808 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 54 |
| Conread position: | 165-396 |
| Cow position: | chr3:57760393-57760619 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 155, 52 |
| Conread position: | 165-399 |
| Cow position: | chr3:74079745-74079513 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 56, 133 |
| Conread position: | 165-406 |
| Cow position: | chr3:16752366-16752127 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 233, 123 |
| Conread position: | 165-407 |
| Cow position: | chr3:9116921-9117157 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 155, 40 |
| Conread position: | 165-408 |
| Cow position: | chr3:4319605-4319846 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 193, 60 |
| Conread position: | 165-408 |
| Cow position: | chr3:54373965-54373728 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 181, 48 |
| Conread position: | 165-408 |
| Cow position: | chr3:55189863-55189621 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 184 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 65, 183 |
| Conread position: | 165-418 |
| Cow position: | chr3:80072020-80072274 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 50, 195 |
| Conread position: | 166-341 |
| Cow position: | chr3:59799142-59799316 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 166-361 |
| Cow position: | chr3:525237-525434 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 72 |
| Conread position: | 166-380 |
| Cow position: | chr3:56059702-56059916 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 48, 156 |
| Conread position: | 166-382 |
| Cow position: | chr3:22165523-22165309 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 55, 46 |
| Conread position: | 166-407 |
| Cow position: | chr3:3316918-3316680 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 216, 52 |
| Conread position: | 168-324 |
| Cow position: | chr3:54030175-54030332 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 169-354 |
| Cow position: | chr3:64135612-64135799 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 171-334 |
| Cow position: | chr3:12670716-12670554 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 44, 60 |
| Conread position: | 171-368 |
| Cow position: | chr3:46541928-46541734 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 171-378 |
| Cow position: | chr3:74601011-74601219 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 49, 155 |
| Conread position: | 171-380 |
| Cow position: | chr3:19626610-19626401 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 45, 151 |
| Conread position: | 171-380 |
| Cow position: | chr3:62789280-62789070 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 49, 190 |
| Conread position: | 172-373 |
| Cow position: | chr3:31361318-31361523 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 48, 83 |
| Conread position: | 174-354 |
| Cow position: | chr3:75608399-75608579 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 44, 107 |
| Conread position: | 175-347 |
| Cow position: | chr3:3471941-3472114 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 74 |
| Conread position: | 175-367 |
| Cow position: | chr3:48362980-48363164 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 181-376 |
| Cow position: | chr3:71474499-71474304 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 41, 169 |
| Conread position: | 182-368 |
| Cow position: | chr3:59299486-59299671 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 123, 44 |
| Conread position: | 184-318 |
| Cow position: | chr3:19162524-19162656 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 72 |
| Conread position: | 184-341 |
| Cow position: | chr3:70614574-70614419 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 31, 104 |
| Conread position: | 184-343 |
| Cow position: | chr3:478888-478730 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 30, 105 |
| Conread position: | 184-347 |
| Cow position: | chr3:31350193-31350030 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 184-354 |
| Cow position: | chr3:55109704-55109532 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 184-361 |
| Cow position: | chr3:47753136-47753314 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 184-370 |
| Cow position: | chr3:44330526-44330342 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 184-380 |
| Cow position: | chr3:7337871-7337679 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 40, 28 |
| Conread position: | 184-380 |
| Cow position: | chr3:69785714-69785516 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 184-382 |
| Cow position: | chr3:78092601-78092405 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 42, 23 |
| Conread position: | 184-387 |
| Cow position: | chr3:49363027-49363220 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 184-407 |
| Cow position: | chr3:17222233-17222005 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 38, 178 |
| Conread position: | 185-368 |
| Cow position: | chr3:11987242-11987422 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 185-368 |
| Cow position: | chr3:18607575-18607765 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 185-393 |
| Cow position: | chr3:83474655-83474863 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 32, 177 |
| Conread position: | 185-397 |
| Cow position: | chr3:22716388-22716174 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 39, 176 |
| Conread position: | 185-398 |
| Cow position: | chr3:15172991-15173204 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 35, 175 |
| Conread position: | 185-408 |
| Cow position: | chr3:19682605-19682835 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 186-362 |
| Cow position: | chr3:18001115-18001287 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 187-378 |
| Cow position: | chr3:64196739-64196931 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 189-361 |
| Cow position: | chr3:10668962-10668791 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 147, 34 |
| Conread position: | 190-378 |
| Cow position: | chr3:3478338-3478152 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 39, 98 |
| Conread position: | 190-393 |
| Cow position: | chr3:4480858-4481060 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 27, 70 |
| Conread position: | 203-420 |
| Cow position: | chr3:20333937-20334156 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 213-370 |
| Cow position: | chr3:68004763-68004607 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 214-380 |
| Cow position: | chr3:49344634-49344801 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 218-397 |
| Cow position: | chr3:82629261-82629439 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 222-356 |
| Cow position: | chr3:53084039-53083903 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 225-382 |
| Cow position: | chr3:75107726-75107880 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 225-408 |
| Cow position: | chr3:23132217-23132039 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 226-382 |
| Cow position: | chr3:38100094-38100250 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 75, 111 |
| Conread position: | 226-408 |
| Cow position: | chr3:26603602-26603418 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 173 |
| Conread position: | 227-363 |
| Cow position: | chr3:41652330-41652466 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 248-396 |
| Cow position: | chr3:4258260-4258113 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 112, 0 |
Show alignments to all cow chromosomes.