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Cow genome map

           
Conread name:
           
Ss1.1-rplun0138_i19.5
        

               
Conread position:
               
1-136
               

               
Cow position:
               
chr1:22864040-22863905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-137
               

               
Cow position:
               
chr1:79884952-79884816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-146
               

               
Cow position:
               
chr1:89809743-89809599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr1:40953588-40953762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:6708216-6708022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr1:40513620-40513413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:59674367-59674594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr1:15347707-15347456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 197
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr1:82407467-82407211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
108, 186
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr1:79920849-79920544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 197
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr1:23050718-23051047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
193, 71
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr1:86609075-86609431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
49, 39
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr1:33895557-33895920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 197
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr1:21476276-21476659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
22, 40
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr1:55276608-55276193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 197
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr1:89740367-89739977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 78
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr1:56489717-56490139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 198
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr1:11292226-11291801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 198
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr1:13450088-13450511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 52
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr1:17036680-17036252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 197
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr1:20828767-20829194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 197
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr1:21087291-21087718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 197
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr1:30283664-30283238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 197
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr1:42290273-42290687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 61
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr1:56723033-56723459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 40
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr1:59210259-59209834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 61
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr1:61308880-61309307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 197
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr1:67835260-67834836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 30
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr1:69766342-69766767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 61
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr1:82564382-82564808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 43
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr1:85791567-85791991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 61
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr1:89425465-89425878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 197
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr1:91898876-91899301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 197
               

               
Conread position:
               
1-427
               

               
Cow position:
               
chr1:101858106-101857682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 197
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:39543649-39544078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 197
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:56163204-56163634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 197
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:80359291-80358873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 58
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr1:91718756-91718330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 84
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chr1:17012858-17012425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 109
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chr1:18880515-18880079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 198
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chr1:28710794-28711230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 197
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chr1:40053233-40053669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 197
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chr1:40684812-40684377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 71
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chr1:62925491-62925927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 197
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chr1:86548256-86547821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 160
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr1:13645609-13646026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 38
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr1:28801546-28801086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 203
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr1:33711941-33712378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 197
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr1:33851157-33851591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 81
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr1:38414680-38415112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 61
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr1:40307942-40308372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 162
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr1:52918741-52918314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 30
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr1:69536782-69537211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 61
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr1:71562700-71562259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 201
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr1:82918783-82918350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 13
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr1:87207539-87207114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 103
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr1:87244671-87245125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 222
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr1:89899824-89899391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 197
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr1:97123710-97124122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 100
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr1:101149713-101150147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 20
               

               
Conread position:
               
1-440
               

               
Cow position:
               
chr1:45097584-45098012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 35
               

               
Conread position:
               
1-440
               

               
Cow position:
               
chr1:88635249-88635688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 197
               

               
Conread position:
               
1-452
               

               
Cow position:
               
chr1:62853964-62853511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 61
               

               
Conread position:
               
1-453
               

               
Cow position:
               
chr1:52233233-52232787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 7
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr1:77112565-77112117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 88
               

               
Conread position:
               
1-491
               

               
Cow position:
               
chr1:34689217-34689709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 35
               

               
Conread position:
               
1-516
               

               
Cow position:
               
chr1:54365943-54365439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 61
               

               
Conread position:
               
1-520
               

               
Cow position:
               
chr1:30027665-30027154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 126
               

               
Conread position:
               
1-521
               

               
Cow position:
               
chr1:72136519-72137034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 61
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chr1:25887278-25886763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 43
               

               
Conread position:
               
2-143
               

               
Cow position:
               
chr1:13253559-13253418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-220
               

               
Cow position:
               
chr1:17941932-17941715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
196, 0
               

               
Conread position:
               
2-222
               

               
Cow position:
               
chr1:62805927-62805708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
196, 0
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr1:25549942-25550197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
222, 169
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr1:55776033-55776413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 18
               

               
Conread position:
               
2-404
               

               
Cow position:
               
chr1:48245690-48246095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 196
               

               
Conread position:
               
2-404
               

               
Cow position:
               
chr1:99910830-99911240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 206
               

               
Conread position:
               
2-415
               

               
Cow position:
               
chr1:12062318-12061904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 196
               

               
Conread position:
               
2-417
               

               
Cow position:
               
chr1:33550801-33551212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 34
               

               
Conread position:
               
2-421
               

               
Cow position:
               
chr1:89770804-89770386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 141
               

               
Conread position:
               
2-422
               

               
Cow position:
               
chr1:18014311-18013888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
208, 133
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr1:1461448-1461025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 66
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr1:42736336-42736759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 76
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr1:58335715-58336142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 196
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr1:68607669-68607236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 200
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr1:76545664-76545231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 195
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr1:76623069-76622650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 51
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr1:79335926-79335497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 196
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr1:86699339-86698910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 196
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr1:88130637-88131078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 208
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr1:93854399-93854828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 196
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr1:102435148-102434732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 89
               

               
Conread position:
               
2-432
               

               
Cow position:
               
chr1:18406311-18405889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 60
               

               
Conread position:
               
2-432
               

               
Cow position:
               
chr1:28872956-28873382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 138
               

               
Conread position:
               
2-432
               

               
Cow position:
               
chr1:52359397-52358969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 196
               

               
Conread position:
               
2-434
               

               
Cow position:
               
chr1:39482102-39481671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 159
               

               
Conread position:
               
2-435
               

               
Cow position:
               
chr1:61738623-61738207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
222, 54
               

               
Conread position:
               
2-436
               

               
Cow position:
               
chr1:63605903-63605467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 196
               

               
Conread position:
               
2-436
               

               
Cow position:
               
chr1:67286369-67286799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 19
               

               
Conread position:
               
2-437
               

               
Cow position:
               
chr1:8824938-8825364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 60
               

               
Conread position:
               
2-437
               

               
Cow position:
               
chr1:57656429-57656858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 60
               

               
Conread position:
               
2-437
               

               
Cow position:
               
chr1:72186994-72186562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 196
               

               
Conread position:
               
2-437
               

               
Cow position:
               
chr1:97226823-97226397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 34
               

               
Conread position:
               
2-439
               

               
Cow position:
               
chr1:79109174-79109588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 25
               

               
Conread position:
               
2-451
               

               
Cow position:
               
chr1:53045901-53045460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
226, 123
               

               
Conread position:
               
2-457
               

               
Cow position:
               
chr1:19992798-19992357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 19
               

               
Conread position:
               
2-457
               

               
Cow position:
               
chr1:57567829-57568287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 196
               

               
Conread position:
               
2-457
               

               
Cow position:
               
chr1:79637049-79636598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 60
               

               
Conread position:
               
2-463
               

               
Cow position:
               
chr1:3386128-3385680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 189
               

               
Conread position:
               
2-463
               

               
Cow position:
               
chr1:22000077-21999616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
309, 196
               

               
Conread position:
               
2-463
               

               
Cow position:
               
chr1:25180152-25179690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 196
               

               
Conread position:
               
2-463
               

               
Cow position:
               
chr1:62244769-62244306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 196
               

               
Conread position:
               
2-463
               

               
Cow position:
               
chr1:69402871-69403321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 138
               

               
Conread position:
               
2-463
               

               
Cow position:
               
chr1:79457088-79456631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 18
               

               
Conread position:
               
2-463
               

               
Cow position:
               
chr1:91893236-91892782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 34
               

               
Conread position:
               
2-473
               

               
Cow position:
               
chr1:31366198-31365724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 196
               

               
Conread position:
               
2-488
               

               
Cow position:
               
chr1:72981146-72981622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 195
               

               
Conread position:
               
2-576
               

               
Cow position:
               
chr1:11863357-11862794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 29
               

               
Conread position:
               
3-396
               

               
Cow position:
               
chr1:15025777-15026159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
221, 122
               

               
Conread position:
               
5-508
               

               
Cow position:
               
chr1:38385403-38384917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
8-324
               

               
Cow position:
               
chr1:37419865-37419552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
213, 54
               

               
Conread position:
               
8-390
               

               
Cow position:
               
chr1:102549115-102549513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 275
               

               
Conread position:
               
8-422
               

               
Cow position:
               
chr1:99374858-99375251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
216, 76
               

               
Conread position:
               
8-423
               

               
Cow position:
               
chr1:76752768-76752353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 84
               

               
Conread position:
               
8-431
               

               
Cow position:
               
chr1:78289766-78290171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 114
               

               
Conread position:
               
8-431
               

               
Cow position:
               
chr1:85780893-85780473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 190
               

               
Conread position:
               
8-435
               

               
Cow position:
               
chr1:84987068-84986641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
179, 24
               

               
Conread position:
               
8-436
               

               
Cow position:
               
chr1:8554213-8554642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 190
               

               
Conread position:
               
8-437
               

               
Cow position:
               
chr1:100597497-100597057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 198
               

               
Conread position:
               
8-444
               

               
Cow position:
               
chr1:56144446-56144017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 25
               

               
Conread position:
               
8-463
               

               
Cow position:
               
chr1:56194047-56193592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 185
               

               
Conread position:
               
8-463
               

               
Cow position:
               
chr1:57367247-57366791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 20
               

               
Conread position:
               
8-463
               

               
Cow position:
               
chr1:72080657-72081119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 190
               

               
Conread position:
               
8-467
               

               
Cow position:
               
chr1:63501343-63501798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 126
               

               
Conread position:
               
9-139
               

               
Cow position:
               
chr1:28722698-28722830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
51, 106
               

               
Conread position:
               
9-437
               

               
Cow position:
               
chr1:72656866-72657301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 195
               

               
Conread position:
               
9-505
               

               
Cow position:
               
chr1:36919793-36920301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
58, 54
               

               
Conread position:
               
9-520
               

               
Cow position:
               
chr1:13880020-13880512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 191
               

               
Conread position:
               
10-460
               

               
Cow position:
               
chr1:49974305-49973853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 189
               

               
Conread position:
               
22-443
               

               
Cow position:
               
chr1:18244481-18244062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 119
               

               
Conread position:
               
28-427
               

               
Cow position:
               
chr1:60339210-60339610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 170
               

               
Conread position:
               
29-436
               

               
Cow position:
               
chr1:28722778-28723187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 170
               

               
Conread position:
               
29-505
               

               
Cow position:
               
chr1:32342169-32341697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 137
               

               
Conread position:
               
29-520
               

               
Cow position:
               
chr1:31330881-31330395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 60
               

               
Conread position:
               
31-427
               

               
Cow position:
               
chr1:29362204-29362601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 167
               

               
Conread position:
               
33-359
               

               
Cow position:
               
chr1:77117681-77117350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 165
               

               
Conread position:
               
33-466
               

               
Cow position:
               
chr1:85748192-85747761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
141, 11
               

               
Conread position:
               
36-457
               

               
Cow position:
               
chr1:82924265-82923843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 149
               

               
Conread position:
               
44-367
               

               
Cow position:
               
chr1:20988873-20989200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
125, 97
               

               
Conread position:
               
44-525
               

               
Cow position:
               
chr1:67901997-67901516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 44
               

               
Conread position:
               
49-496
               

               
Cow position:
               
chr1:69060452-69060868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
67, 11
               

               
Conread position:
               
50-347
               

               
Cow position:
               
chr1:30058470-30058763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
112, 28
               

               
Conread position:
               
50-435
               

               
Cow position:
               
chr1:99021028-99020647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
40, 12
               

               
Conread position:
               
50-505
               

               
Cow position:
               
chr1:46835452-46835902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 51
               

               
Conread position:
               
51-434
               

               
Cow position:
               
chr1:82355659-82356026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
173, 69
               

               
Conread position:
               
53-463
               

               
Cow position:
               
chr1:73071127-73070715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 145
               

               
Conread position:
               
63-431
               

               
Cow position:
               
chr1:58884128-58883760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 135
               

               
Conread position:
               
64-427
               

               
Cow position:
               
chr1:40574156-40574518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 134
               

               
Conread position:
               
64-523
               

               
Cow position:
               
chr1:89479262-89479710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 85
               

               
Conread position:
               
68-411
               

               
Cow position:
               
chr1:88396316-88395979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
150, 71
               

               
Conread position:
               
68-419
               

               
Cow position:
               
chr1:56856500-56856846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
11, 130
               

               
Conread position:
               
75-435
               

               
Cow position:
               
chr1:87749989-87750333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
149, 33
               

               
Conread position:
               
83-431
               

               
Cow position:
               
chr1:94659651-94659989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 18
               

               
Conread position:
               
83-435
               

               
Cow position:
               
chr1:88270635-88270301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
141, 6
               

               
Conread position:
               
85-437
               

               
Cow position:
               
chr1:99349073-99348723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 10
               

               
Conread position:
               
92-436
               

               
Cow position:
               
chr1:31396659-31397004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 106
               

               
Conread position:
               
98-282
               

               
Cow position:
               
chr1:85533439-85533256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
125, 63
               

               
Conread position:
               
106-427
               

               
Cow position:
               
chr1:82652636-82652958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 92
               

               
Conread position:
               
111-508
               

               
Cow position:
               
chr1:88682435-88682037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
111, 77
               

               
Conread position:
               
111-578
               

               
Cow position:
               
chr1:55323067-55322606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 30
               

               
Conread position:
               
112-431
               

               
Cow position:
               
chr1:85881991-85882309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 87
               

               
Conread position:
               
152-427
               

               
Cow position:
               
chr1:82913115-82912839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 46
               

               
Conread position:
               
163-436
               

               
Cow position:
               
chr1:95239408-95239685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 36
               

               
Conread position:
               
166-347
               

               
Cow position:
               
chr1:38387639-38387460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
58, 32
               

               
Conread position:
               
166-456
               

               
Cow position:
               
chr1:5501976-5502267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 32
               

               
Conread position:
               
166-520
               

               
Cow position:
               
chr1:78360785-78361133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
58, 33
               

               
Conread position:
               
178-437
               

               
Cow position:
               
chr1:66686477-66686224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
46, 19
               

               
Conread position:
               
180-334
               

               
Cow position:
               
chr1:60280456-60280301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
44, 18
               

               
Conread position:
               
198-426
               

               
Cow position:
               
chr1:17941709-17941484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
7, 70
               

               
Conread position:
               
223-402
               

               
Cow position:
               
chr1:40954002-40954181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
91, 42
               

               
Conread position:
               
223-432
               

               
Cow position:
               
chr1:38396329-38396539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
37, 105
               

               
Conread position:
               
227-580
               

               
Cow position:
               
chr1:24650861-24651212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 56
               

               
Conread position:
               
237-431
               

               
Cow position:
               
chr1:69922324-69922131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
78, 28
               

               
Conread position:
               
237-588
               

               
Cow position:
               
chr1:40513264-40512917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 28
               

               
Conread position:
               
240-431
               

               
Cow position:
               
chr1:65386445-65386635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
75, 25
               

               
Conread position:
               
256-427
               

               
Cow position:
               
chr1:9382411-9382243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
57, 11
               

               
Conread position:
               
257-585
               

               
Cow position:
               
chr1:94253052-94253378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 8
               

               
Conread position:
               
262-572
               

               
Cow position:
               
chr1:42870104-42869804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
52, 177
               

               
Conread position:
               
265-560
               

               
Cow position:
               
chr1:21720030-21720320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
50, 206
               

               
Conread position:
               
269-437
               

               
Cow position:
               
chr1:59674595-59674764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
273-444
               

               
Cow position:
               
chr1:18027620-18027448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
273-460
               

               
Cow position:
               
chr1:53198699-53198886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 157
               

               
Conread position:
               
276-457
               

               
Cow position:
               
chr1:72039196-72039014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
287-448
               

               
Cow position:
               
chr1:87516120-87515959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
27, 153
               

               
Conread position:
               
308-463
               

               
Cow position:
               
chr1:30534840-30534683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
314-422
               

               
Cow position:
               
chr1:5355318-5355426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
315-427
               

               
Cow position:
               
chr1:57424646-57424534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
374-560
               

               
Cow position:
               
chr1:38387456-38387276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
92, 0
               
Show alignments to all cow chromosomes.