Cow genome map

Conread name: Ss1.1-rplun0138_i19.5

Conread position: 1-146
Cow position:
Alignm length: 146
Alignm identity: 111
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 141, 0

Conread position: 1-175
Cow position:
Alignm length: 175
Alignm identity: 131
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 1-244
Cow position:
Alignm length: 246
Alignm identity: 177
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 222, 197

Conread position: 1-248
Cow position:
Alignm length: 250
Alignm identity: 189
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 223, 18

Conread position: 1-274
Cow position:
Alignm length: 276
Alignm identity: 192
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 223, 39

Conread position: 1-282
Cow position:
Alignm length: 284
Alignm identity: 200
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 223, 47

Conread position: 1-306
Cow position:
Alignm length: 308
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 176

Conread position: 1-326
Cow position:
Alignm length: 329
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 160

Conread position: 1-361
Cow position:
Alignm length: 364
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 61

Conread position: 1-385
Cow position:
Alignm length: 385
Alignm identity: 242
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 1-390
Cow position:
Alignm length: 410
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 133

Conread position: 1-404
Cow position:
Alignm length: 411
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 136

Conread position: 1-417
Cow position:
Alignm length: 420
Alignm identity: 273
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 350, 86

Conread position: 1-423
Cow position:
Alignm length: 426
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 121

Conread position: 1-427
Cow position:
Alignm length: 435
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 183

Conread position: 1-427
Cow position:
Alignm length: 433
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 178

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 429
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 192

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 58

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 12

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-431
Cow position:
Alignm length: 434
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 115

Conread position: 1-433
Cow position:
Alignm length: 436
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 103

Conread position: 1-435
Cow position:
Alignm length: 449
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 140

Conread position: 1-436
Cow position:
Alignm length: 446
Alignm identity: 291
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 170, 20

Conread position: 1-437
Cow position:
Alignm length: 440
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 197

Conread position: 1-437
Cow position:
Alignm length: 441
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 61

Conread position: 1-437
Cow position:
Alignm length: 444
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-437
Cow position:
Alignm length: 441
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 160

Conread position: 1-437
Cow position:
Alignm length: 443
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 161

Conread position: 1-451
Cow position:
Alignm length: 472
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 35

Conread position: 1-473
Cow position:
Alignm length: 479
Alignm identity: 303
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 177, 198

Conread position: 1-488
Cow position:
Alignm length: 491
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 42

Conread position: 1-518
Cow position:
Alignm length: 530
Alignm identity: 346
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 47, 42

Conread position: 1-519
Cow position:
Alignm length: 524
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 61

Conread position: 1-519
Cow position:
Alignm length: 520
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 102

Conread position: 1-520
Cow position:
Alignm length: 535
Alignm identity: 331
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 160, 39

Conread position: 1-520
Cow position:
Alignm length: 524
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 23

Conread position: 1-525
Cow position:
Alignm length: 533
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 61

Conread position: 2-222
Cow position:
Alignm length: 221
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 0

Conread position: 2-356
Cow position:
Alignm length: 359
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 118

Conread position: 2-407
Cow position:
Alignm length: 413
Alignm identity: 270
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 119, 80

Conread position: 2-417
Cow position:
Alignm length: 417
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 26

Conread position: 2-417
Cow position:
Alignm length: 417
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 34

Conread position: 2-431
Cow position:
Alignm length: 435
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 61

Conread position: 2-431
Cow position:
Alignm length: 432
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 38

Conread position: 2-431
Cow position:
Alignm length: 434
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 197

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 26

Conread position: 2-432
Cow position:
Alignm length: 434
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 63

Conread position: 2-451
Cow position:
Alignm length: 451
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 133

Conread position: 2-460
Cow position:
Alignm length: 463
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 196

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position:
Alignm length: 465
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 196

Conread position: 2-488
Cow position:
Alignm length: 491
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 34

Conread position: 4-457
Cow position:
Alignm length: 456
Alignm identity: 297
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 220, 31

Conread position: 4-588
Cow position:
Alignm length: 590
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 58

Conread position: 5-384
Cow position:
Alignm length: 383
Alignm identity: 254
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 217, 99

Conread position: 8-396
Cow position:
Alignm length: 397
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 57

Conread position: 8-463
Cow position:
Alignm length: 461
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 34

Conread position: 8-505
Cow position:
Alignm length: 515
Alignm identity: 331
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 168, 153

Conread position: 8-508
Cow position:
Alignm length: 511
Alignm identity: 312
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 215, 31

Conread position: 8-519
Cow position:
Alignm length: 523
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 54

Conread position: 9-427
Cow position:
Alignm length: 422
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 83

Conread position: 9-433
Cow position:
Alignm length: 428
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 189

Conread position: 9-495
Cow position:
Alignm length: 503
Alignm identity: 320
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 169, 58

Conread position: 10-431
Cow position:
Alignm length: 426
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 189

Conread position: 14-463
Cow position:
Alignm length: 460
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 140

Conread position: 17-437
Cow position:
Alignm length: 424
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 107

Conread position: 36-431
Cow position:
Alignm length: 399
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 162

Conread position: 39-427
Cow position:
Alignm length: 392
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 159

Conread position: 64-432
Cow position:
Alignm length: 372
Alignm identity: 248
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 162, 30

Conread position: 65-520
Cow position:
Alignm length: 460
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 133

Conread position: 77-302
Cow position:
Alignm length: 230
Alignm identity: 176
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 78, 41

Conread position: 79-457
Cow position:
Alignm length: 385
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 119

Conread position: 82-460
Cow position:
Alignm length: 385
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 103

Conread position: 83-520
Cow position:
Alignm length: 441
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 65

Conread position: 101-301
Cow position:
Alignm length: 203
Alignm identity: 149
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 123, 60

Conread position: 101-356
Cow position:
Alignm length: 259
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 84

Conread position: 105-215
Cow position:
Alignm length: 111
Alignm identity: 90
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 93, 0

Conread position: 110-419
Cow position:
Alignm length: 313
Alignm identity: 217
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 114, 88

Conread position: 125-431
Cow position:
Alignm length: 322
Alignm identity: 231
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 61, 79

Conread position: 131-435
Cow position:
Alignm length: 308
Alignm identity: 196
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 105, 135

Conread position: 131-513
Cow position:
Alignm length: 388
Alignm identity: 264
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 93, 16

Conread position: 131-520
Cow position:
Alignm length: 411
Alignm identity: 268
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 29, 74

Conread position: 135-436
Cow position:
Alignm length: 306
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 63

Conread position: 138-520
Cow position:
Alignm length: 386
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 52

Conread position: 141-347
Cow position:
Alignm length: 211
Alignm identity: 157
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 83, 57

Conread position: 165-456
Cow position:
Alignm length: 299
Alignm identity: 197
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 59, 33

Conread position: 166-462
Cow position:
Alignm length: 305
Alignm identity: 205
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 12, 33

Conread position: 166-494
Cow position:
Alignm length: 335
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 190

Conread position: 167-433
Cow position:
Alignm length: 270
Alignm identity: 184
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 11, 32

Conread position: 219-434
Cow position:
Alignm length: 220
Alignm identity: 171
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 95, 46

Conread position: 223-434
Cow position:
Alignm length: 213
Alignm identity: 146
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 89, 42

Conread position: 223-436
Cow position:
Alignm length: 216
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 42

Conread position: 223-451
Cow position:
Alignm length: 230
Alignm identity: 156
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 91, 42

Conread position: 223-531
Cow position:
Alignm length: 310
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 42

Conread position: 223-560
Cow position:
Alignm length: 339
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 42

Conread position: 224-451
Cow position:
Alignm length: 230
Alignm identity: 164
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 90, 43

Conread position: 264-431
Cow position:
Alignm length: 169
Alignm identity: 129
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 51, 157

Conread position: 270-508
Cow position:
Alignm length: 242
Alignm identity: 161
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 44, 105

Conread position: 277-419
Cow position:
Alignm length: 145
Alignm identity: 120
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 5, 0

Conread position: 291-588
Cow position:
Alignm length: 302
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 122

Conread position: 302-436
Cow position:
Alignm length: 136
Alignm identity: 114
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 13, 0

Conread position: 319-427
Cow position:
Alignm length: 109
Alignm identity: 90
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 330-437
Cow position:
Alignm length: 108
Alignm identity: 88
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 350-558
Cow position:
Alignm length: 214
Alignm identity: 149
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 106, 23

Conread position: 355-520
Cow position:
Alignm length: 166
Alignm identity: 117
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 371-580
Cow position:
Alignm length: 211
Alignm identity: 161
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 135, 33

Show alignments to all cow chromosomes.