Cow genome map

Conread name: Ss1.1-rplun0138_i19.5

Conread position: 1-133
Cow position:
Alignm length: 134
Alignm identity: 109
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 48, 62

Conread position: 1-141
Cow position:
Alignm length: 141
Alignm identity: 105
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 103, 0

Conread position: 1-189
Cow position:
Alignm length: 189
Alignm identity: 134
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 18, 0

Conread position: 1-282
Cow position:
Alignm length: 289
Alignm identity: 190
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 115, 124

Conread position: 1-312
Cow position:
Alignm length: 312
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 0

Conread position: 1-347
Cow position:
Alignm length: 350
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 27

Conread position: 1-369
Cow position:
Alignm length: 383
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 180

Conread position: 1-390
Cow position:
Alignm length: 397
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 61

Conread position: 1-394
Cow position:
Alignm length: 396
Alignm identity: 252
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 108, 100

Conread position: 1-402
Cow position:
Alignm length: 406
Alignm identity: 259
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 225, 108

Conread position: 1-403
Cow position:
Alignm length: 411
Alignm identity: 262
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 223, 151

Conread position: 1-411
Cow position:
Alignm length: 415
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 169

Conread position: 1-421
Cow position:
Alignm length: 426
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 61

Conread position: 1-423
Cow position:
Alignm length: 427
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 42

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 67

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 61

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 56

Conread position: 1-427
Cow position:
Alignm length: 431
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 160

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 160

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 15

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 142

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 431
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 198

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 62

Conread position: 1-431
Cow position:
Alignm length: 434
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 38

Conread position: 1-431
Cow position:
Alignm length: 436
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 61

Conread position: 1-431
Cow position:
Alignm length: 434
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 58

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 140

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-437
Cow position:
Alignm length: 452
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 57

Conread position: 1-437
Cow position:
Alignm length: 440
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-437
Cow position:
Alignm length: 452
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 35

Conread position: 1-437
Cow position:
Alignm length: 447
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 123

Conread position: 1-444
Cow position:
Alignm length: 452
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 64

Conread position: 1-446
Cow position:
Alignm length: 448
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 197

Conread position: 1-455
Cow position:
Alignm length: 477
Alignm identity: 305
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 131, 26

Conread position: 1-503
Cow position:
Alignm length: 510
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 160

Conread position: 1-520
Cow position:
Alignm length: 528
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 19

Conread position: 1-521
Cow position:
Alignm length: 532
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 63

Conread position: 1-560
Cow position:
Alignm length: 565
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 61

Conread position: 2-315
Cow position:
Alignm length: 316
Alignm identity: 209
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 220, 135

Conread position: 2-315
Cow position:
Alignm length: 316
Alignm identity: 210
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 220, 135

Conread position: 2-389
Cow position:
Alignm length: 391
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 121

Conread position: 2-395
Cow position:
Alignm length: 398
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-412
Cow position:
Alignm length: 414
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-412
Cow position:
Alignm length: 420
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 60

Conread position: 2-417
Cow position:
Alignm length: 419
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 113

Conread position: 2-431
Cow position:
Alignm length: 434
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 197

Conread position: 2-431
Cow position:
Alignm length: 434
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 60

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 184

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 119

Conread position: 2-433
Cow position:
Alignm length: 437
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 90

Conread position: 2-436
Cow position:
Alignm length: 440
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 118

Conread position: 2-437
Cow position:
Alignm length: 440
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 160

Conread position: 2-446
Cow position:
Alignm length: 448
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 46

Conread position: 2-456
Cow position:
Alignm length: 460
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 60

Conread position: 2-457
Cow position:
Alignm length: 470
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 149

Conread position: 2-463
Cow position:
Alignm length: 476
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 120

Conread position: 2-463
Cow position:
Alignm length: 467
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 72

Conread position: 2-463
Cow position:
Alignm length: 467
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 197

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position:
Alignm length: 484
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 196

Conread position: 2-560
Cow position:
Alignm length: 573
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 60

Conread position: 3-383
Cow position:
Alignm length: 384
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 109

Conread position: 3-431
Cow position:
Alignm length: 432
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 137

Conread position: 3-436
Cow position:
Alignm length: 437
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 138

Conread position: 3-457
Cow position:
Alignm length: 461
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 60

Conread position: 5-437
Cow position:
Alignm length: 436
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 31

Conread position: 5-454
Cow position:
Alignm length: 454
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 99

Conread position: 8-370
Cow position:
Alignm length: 366
Alignm identity: 248
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 216, 112

Conread position: 8-416
Cow position:
Alignm length: 413
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-431
Cow position:
Alignm length: 427
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 135

Conread position: 8-457
Cow position:
Alignm length: 455
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 54

Conread position: 9-191
Cow position:
Alignm length: 183
Alignm identity: 139
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 21-457
Cow position:
Alignm length: 452
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 128

Conread position: 29-191
Cow position:
Alignm length: 163
Alignm identity: 129
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 84, 0

Conread position: 29-394
Cow position:
Alignm length: 371
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 107

Conread position: 41-436
Cow position:
Alignm length: 401
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 157

Conread position: 44-437
Cow position:
Alignm length: 404
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 117

Conread position: 49-280
Cow position:
Alignm length: 234
Alignm identity: 165
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 175, 59

Conread position: 50-474
Cow position:
Alignm length: 434
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 148

Conread position: 53-399
Cow position:
Alignm length: 354
Alignm identity: 234
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 119, 10

Conread position: 55-331
Cow position:
Alignm length: 281
Alignm identity: 197
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 169, 80

Conread position: 68-436
Cow position:
Alignm length: 372
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 130

Conread position: 82-387
Cow position:
Alignm length: 309
Alignm identity: 184
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 65, 221

Conread position: 84-397
Cow position:
Alignm length: 317
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 114

Conread position: 97-436
Cow position:
Alignm length: 345
Alignm identity: 237
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 127, 91

Conread position: 105-409
Cow position:
Alignm length: 308
Alignm identity: 212
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 12, 126

Conread position: 107-538
Cow position:
Alignm length: 444
Alignm identity: 278
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 119, 34

Conread position: 117-364
Cow position:
Alignm length: 251
Alignm identity: 184
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 107, 32

Conread position: 122-436
Cow position:
Alignm length: 318
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 76

Conread position: 130-493
Cow position:
Alignm length: 370
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 51

Conread position: 131-366
Cow position:
Alignm length: 239
Alignm identity: 175
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 39, 68

Conread position: 131-376
Cow position:
Alignm length: 249
Alignm identity: 164
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 95, 60

Conread position: 131-417
Cow position:
Alignm length: 291
Alignm identity: 204
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 93, 30

Conread position: 172-435
Cow position:
Alignm length: 267
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 26

Conread position: 181-404
Cow position:
Alignm length: 227
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 17

Conread position: 201-427
Cow position:
Alignm length: 230
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 68

Conread position: 212-437
Cow position:
Alignm length: 231
Alignm identity: 140
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 101, 85

Conread position: 223-405
Cow position:
Alignm length: 189
Alignm identity: 137
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 114, 44

Conread position: 224-488
Cow position:
Alignm length: 272
Alignm identity: 194
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 69, 41

Conread position: 232-413
Cow position:
Alignm length: 182
Alignm identity: 134
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 232-424
Cow position:
Alignm length: 195
Alignm identity: 154
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 83, 33

Conread position: 236-427
Cow position:
Alignm length: 193
Alignm identity: 152
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 79, 29

Conread position: 239-414
Cow position:
Alignm length: 177
Alignm identity: 149
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 26

Conread position: 241-463
Cow position:
Alignm length: 226
Alignm identity: 133
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 74, 6

Conread position: 245-454
Cow position:
Alignm length: 211
Alignm identity: 164
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 69, 21

Conread position: 256-585
Cow position:
Alignm length: 331
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 9

Conread position: 291-456
Cow position:
Alignm length: 167
Alignm identity: 127
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 24, 91

Conread position: 307-437
Cow position:
Alignm length: 131
Alignm identity: 104
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 309-444
Cow position:
Alignm length: 137
Alignm identity: 108
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 36, 43

Conread position: 331-437
Cow position:
Alignm length: 107
Alignm identity: 87
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 394-588
Cow position:
Alignm length: 199
Alignm identity: 139
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 37, 78

Show alignments to all cow chromosomes.