Cow genome map
| Conread name: | Ss1.1-rplun0138_i19.5 |
| Conread position: | 1-335 |
| Cow position: | chr12:8982590-8982263 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 237 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 175, 134 |
| Conread position: | 1-343 |
| Cow position: | chr12:26141640-26141983 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-357 |
| Cow position: | chr12:21207521-21207876 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 1-379 |
| Cow position: | chr12:1137413-1137778 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 146, 42 |
| Conread position: | 1-427 |
| Cow position: | chr12:3360730-3361157 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-427 |
| Cow position: | chr12:21254829-21254403 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 160 |
| Conread position: | 1-427 |
| Cow position: | chr12:32653371-32653797 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 148 |
| Conread position: | 1-427 |
| Cow position: | chr12:37558381-37558809 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-427 |
| Cow position: | chr12:43031556-43031132 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 58 |
| Conread position: | 1-431 |
| Cow position: | chr12:2625-3056 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-431 |
| Cow position: | chr12:21426520-21426950 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-437 |
| Cow position: | chr12:8311012-8311444 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 160 |
| Conread position: | 1-437 |
| Cow position: | chr12:20998293-20997870 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 61 |
| Conread position: | 1-437 |
| Cow position: | chr12:22332448-22332887 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 61 |
| Conread position: | 1-437 |
| Cow position: | chr12:26947154-26946727 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 125 |
| Conread position: | 1-437 |
| Cow position: | chr12:45261441-45261886 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 139 |
| Conread position: | 1-440 |
| Cow position: | chr12:21901773-21902205 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 42 |
| Conread position: | 1-578 |
| Cow position: | chr12:15951433-15950871 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 19 |
| Conread position: | 2-146 |
| Cow position: | chr12:14662784-14662640 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-388 |
| Cow position: | chr12:17975378-17975751 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 260 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 214, 136 |
| Conread position: | 2-431 |
| Cow position: | chr12:6406818-6406395 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 60 |
| Conread position: | 2-431 |
| Cow position: | chr12:8678294-8677865 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 21 |
| Conread position: | 2-431 |
| Cow position: | chr12:22205919-22205492 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-431 |
| Cow position: | chr12:25101234-25100805 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 2-431 |
| Cow position: | chr12:42859987-42859571 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 34 |
| Conread position: | 2-463 |
| Cow position: | chr12:11098069-11098532 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-463 |
| Cow position: | chr12:27933118-27932655 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-466 |
| Cow position: | chr12:28766189-28765727 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 34 |
| Conread position: | 2-504 |
| Cow position: | chr12:3632427-3631939 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 121 |
| Conread position: | 3-165 |
| Cow position: | chr12:48404874-48405034 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 113, 59 |
| Conread position: | 3-458 |
| Cow position: | chr12:2282375-2282830 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 140 |
| Conread position: | 4-434 |
| Cow position: | chr12:21941605-21942027 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 124 |
| Conread position: | 8-431 |
| Cow position: | chr12:1402324-1402746 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 190 |
| Conread position: | 8-436 |
| Cow position: | chr12:252222-251794 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 37 |
| Conread position: | 8-520 |
| Cow position: | chr12:21499952-21500444 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 107 |
| Conread position: | 59-415 |
| Cow position: | chr12:14693518-14693864 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 88 |
| Conread position: | 65-432 |
| Cow position: | chr12:18500941-18501290 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 163, 27 |
| Conread position: | 79-521 |
| Cow position: | chr12:34854886-34854460 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 290 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 90, 26 |
| Conread position: | 95-417 |
| Cow position: | chr12:16841202-16840885 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 87 |
| Conread position: | 107-419 |
| Cow position: | chr12:16293864-16294175 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 158, 81 |
| Conread position: | 126-404 |
| Cow position: | chr12:2838903-2838625 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 199 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 98, 72 |
| Conread position: | 136-343 |
| Cow position: | chr12:48405232-48405441 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 88, 64 |
| Conread position: | 148-436 |
| Cow position: | chr12:33986137-33986424 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 29 |
| Conread position: | 152-431 |
| Cow position: | chr12:21197935-21198216 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 72, 46 |
| Conread position: | 153-437 |
| Cow position: | chr12:14662655-14662370 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 45 |
| Conread position: | 229-437 |
| Cow position: | chr12:5861209-5861416 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 36 |
| Conread position: | 235-427 |
| Cow position: | chr12:23240065-23240256 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 79, 30 |
| Conread position: | 316-437 |
| Cow position: | chr12:31544920-31545041 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 328-436 |
| Cow position: | chr12:4157531-4157639 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.