Cow genome map
| Conread name: | Ss1.1-rplun0138_i19.5 |
| Conread position: | 1-294 |
| Cow position: | chr13:2232265-2232559 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-357 |
| Cow position: | chr13:30245128-30244772 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 198 |
| Conread position: | 1-427 |
| Cow position: | chr13:2297193-2296779 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-427 |
| Cow position: | chr13:13324358-13324781 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 14 |
| Conread position: | 1-427 |
| Cow position: | chr13:21840589-21840162 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-427 |
| Cow position: | chr13:31734475-31734053 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 97 |
| Conread position: | 1-427 |
| Cow position: | chr13:32986444-32986025 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 118 |
| Conread position: | 1-427 |
| Cow position: | chr13:49973288-49973716 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 266 |
| Conread position: | 1-431 |
| Cow position: | chr13:33927957-33927552 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 139 |
| Conread position: | 1-431 |
| Cow position: | chr13:34143053-34142622 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 125 |
| Conread position: | 1-431 |
| Cow position: | chr13:50109069-50109497 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 58 |
| Conread position: | 1-433 |
| Cow position: | chr13:34187082-34186649 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 199 |
| Conread position: | 1-434 |
| Cow position: | chr13:31832207-31832636 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 61 |
| Conread position: | 1-436 |
| Cow position: | chr13:4872682-4873117 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-437 |
| Cow position: | chr13:3276763-3277196 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 177 |
| Conread position: | 1-437 |
| Cow position: | chr13:30657359-30656935 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 59 |
| Conread position: | 1-437 |
| Cow position: | chr13:34692768-34693207 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 160 |
| Conread position: | 1-437 |
| Cow position: | chr13:56730676-56730245 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 61 |
| Conread position: | 1-462 |
| Cow position: | chr13:17308080-17308541 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-499 |
| Cow position: | chr13:34936748-34937250 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 126 |
| Conread position: | 1-560 |
| Cow position: | chr13:20542759-20542212 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 13 |
| Conread position: | 1-588 |
| Cow position: | chr13:54284188-54284763 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 61 |
| Conread position: | 2-221 |
| Cow position: | chr13:34868375-34868597 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 31, 66 |
| Conread position: | 2-276 |
| Cow position: | chr13:30302673-30302944 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 52 |
| Conread position: | 2-391 |
| Cow position: | chr13:21130935-21131317 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 69, 37 |
| Conread position: | 2-410 |
| Cow position: | chr13:33336716-33336333 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 34 |
| Conread position: | 2-412 |
| Cow position: | chr13:6668517-6668106 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-431 |
| Cow position: | chr13:1593547-1593120 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 172 |
| Conread position: | 2-431 |
| Cow position: | chr13:4940693-4941123 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 196 |
| Conread position: | 2-432 |
| Cow position: | chr13:30063740-30064159 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 72 |
| Conread position: | 2-436 |
| Cow position: | chr13:34326071-34325634 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 198 |
| Conread position: | 2-441 |
| Cow position: | chr13:35756847-35757287 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-446 |
| Cow position: | chr13:30140600-30141059 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 316 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 38, 88 |
| Conread position: | 2-463 |
| Cow position: | chr13:15520907-15520446 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 102 |
| Conread position: | 2-463 |
| Cow position: | chr13:31612729-31612267 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-463 |
| Cow position: | chr13:34042758-34042301 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 141 |
| Conread position: | 2-470 |
| Cow position: | chr13:62327975-62327506 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 60 |
| Conread position: | 2-501 |
| Cow position: | chr13:43852691-43852187 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 222, 29 |
| Conread position: | 4-414 |
| Cow position: | chr13:2908840-2908430 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 58 |
| Conread position: | 5-508 |
| Cow position: | chr13:2306112-2306603 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 324 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 135, 145 |
| Conread position: | 6-504 |
| Cow position: | chr13:60701666-60701201 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 326 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 90, 48 |
| Conread position: | 8-386 |
| Cow position: | chr13:23003903-23003527 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 190 |
| Conread position: | 8-431 |
| Cow position: | chr13:15924770-15924349 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 54 |
| Conread position: | 8-431 |
| Cow position: | chr13:32738208-32737787 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 190 |
| Conread position: | 8-436 |
| Cow position: | chr13:3654698-3654283 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 191 |
| Conread position: | 9-405 |
| Cow position: | chr13:19438556-19438943 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 214, 133 |
| Conread position: | 10-431 |
| Cow position: | chr13:9044124-9044535 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 116 |
| Conread position: | 10-434 |
| Cow position: | chr13:34911754-34911341 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 44 |
| Conread position: | 11-211 |
| Cow position: | chr13:32544556-32544754 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 12-245 |
| Cow position: | chr13:15451868-15451649 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 23-437 |
| Cow position: | chr13:33825102-33824693 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 117 |
| Conread position: | 26-456 |
| Cow position: | chr13:35030178-35030611 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 118 |
| Conread position: | 27-362 |
| Cow position: | chr13:41312132-41311794 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 138, 15 |
| Conread position: | 33-527 |
| Cow position: | chr13:34767638-34767168 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 59 |
| Conread position: | 36-427 |
| Cow position: | chr13:3567425-3567826 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 26 |
| Conread position: | 42-436 |
| Cow position: | chr13:36960932-36960540 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 54, 58 |
| Conread position: | 45-274 |
| Cow position: | chr13:48356954-48357183 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 67, 17 |
| Conread position: | 61-427 |
| Cow position: | chr13:2389157-2388786 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 141 |
| Conread position: | 93-431 |
| Cow position: | chr13:32544757-32545094 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 220, 172 |
| Conread position: | 94-439 |
| Cow position: | chr13:31560888-31561231 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 52 |
| Conread position: | 100-508 |
| Cow position: | chr13:19220116-19219706 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 94, 102 |
| Conread position: | 104-301 |
| Cow position: | chr13:10114943-10114748 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 66, 96 |
| Conread position: | 104-408 |
| Cow position: | chr13:47230278-47229974 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 16 |
| Conread position: | 120-459 |
| Cow position: | chr13:28672910-28672575 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 109, 78 |
| Conread position: | 125-432 |
| Cow position: | chr13:38807626-38807924 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 68 |
| Conread position: | 126-436 |
| Cow position: | chr13:16343484-16343177 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 58, 11 |
| Conread position: | 152-451 |
| Cow position: | chr13:46732465-46732174 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 47 |
| Conread position: | 161-431 |
| Cow position: | chr13:4178886-4178616 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 37 |
| Conread position: | 167-431 |
| Cow position: | chr13:4483569-4483829 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 31 |
| Conread position: | 185-412 |
| Cow position: | chr13:3338576-3338805 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 39, 13 |
| Conread position: | 193-496 |
| Cow position: | chr13:45647789-45648101 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 22 |
| Conread position: | 204-497 |
| Cow position: | chr13:21601386-21601683 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 14, 63 |
| Conread position: | 223-343 |
| Cow position: | chr13:30237946-30238066 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 90, 42 |
| Conread position: | 223-427 |
| Cow position: | chr13:60466165-60466369 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 42 |
| Conread position: | 225-427 |
| Cow position: | chr13:3058281-3058078 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 42 |
| Conread position: | 253-437 |
| Cow position: | chr13:9540215-9540032 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 12 |
| Conread position: | 265-427 |
| Cow position: | chr13:34868609-34868774 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 19, 88 |
| Conread position: | 267-520 |
| Cow position: | chr13:34111166-34111407 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 47, 66 |
| Conread position: | 279-427 |
| Cow position: | chr13:676759-676908 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 305-585 |
| Cow position: | chr13:15451647-15451376 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 112 |
| Conread position: | 310-437 |
| Cow position: | chr13:22765938-22766065 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 24 |
Show alignments to all cow chromosomes.