Cow genome map

Conread name: Ss1.1-rplun0138_i19.5

Conread position: 1-294
Cow position:
Alignm length: 296
Alignm identity: 182
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 222, 197

Conread position: 1-357
Cow position:
Alignm length: 360
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 198

Conread position: 1-427
Cow position:
Alignm length: 429
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 14

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 97

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 118

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 266

Conread position: 1-431
Cow position:
Alignm length: 433
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 139

Conread position: 1-431
Cow position:
Alignm length: 436
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 125

Conread position: 1-431
Cow position:
Alignm length: 434
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 58

Conread position: 1-433
Cow position:
Alignm length: 438
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 199

Conread position: 1-434
Cow position:
Alignm length: 437
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 61

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-437
Cow position:
Alignm length: 440
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 177

Conread position: 1-437
Cow position:
Alignm length: 439
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 59

Conread position: 1-437
Cow position:
Alignm length: 443
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 160

Conread position: 1-437
Cow position:
Alignm length: 441
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 61

Conread position: 1-462
Cow position:
Alignm length: 465
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-499
Cow position:
Alignm length: 509
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 126

Conread position: 1-560
Cow position:
Alignm length: 563
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 13

Conread position: 1-588
Cow position:
Alignm length: 598
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 61

Conread position: 2-221
Cow position:
Alignm length: 226
Alignm identity: 163
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 31, 66

Conread position: 2-276
Cow position:
Alignm length: 277
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 52

Conread position: 2-391
Cow position:
Alignm length: 397
Alignm identity: 265
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 69, 37

Conread position: 2-410
Cow position:
Alignm length: 412
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 34

Conread position: 2-412
Cow position:
Alignm length: 414
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 172

Conread position: 2-431
Cow position:
Alignm length: 434
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 196

Conread position: 2-432
Cow position:
Alignm length: 432
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 72

Conread position: 2-436
Cow position:
Alignm length: 441
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 198

Conread position: 2-441
Cow position:
Alignm length: 443
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-446
Cow position:
Alignm length: 468
Alignm identity: 316
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 38, 88

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 102

Conread position: 2-463
Cow position:
Alignm length: 467
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position:
Alignm length: 465
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 141

Conread position: 2-470
Cow position:
Alignm length: 475
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 60

Conread position: 2-501
Cow position:
Alignm length: 512
Alignm identity: 316
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 222, 29

Conread position: 4-414
Cow position:
Alignm length: 415
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 58

Conread position: 5-508
Cow position:
Alignm length: 509
Alignm identity: 324
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 135, 145

Conread position: 6-504
Cow position:
Alignm length: 504
Alignm identity: 326
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 90, 48

Conread position: 8-386
Cow position:
Alignm length: 382
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-431
Cow position:
Alignm length: 428
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 54

Conread position: 8-431
Cow position:
Alignm length: 426
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-436
Cow position:
Alignm length: 433
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 191

Conread position: 9-405
Cow position:
Alignm length: 402
Alignm identity: 259
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 214, 133

Conread position: 10-431
Cow position:
Alignm length: 426
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 116

Conread position: 10-434
Cow position:
Alignm length: 428
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 44

Conread position: 11-211
Cow position:
Alignm length: 201
Alignm identity: 150
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 187, 0

Conread position: 12-245
Cow position:
Alignm length: 234
Alignm identity: 179
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 107, 0

Conread position: 23-437
Cow position:
Alignm length: 417
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 117

Conread position: 26-456
Cow position:
Alignm length: 448
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 118

Conread position: 27-362
Cow position:
Alignm length: 344
Alignm identity: 221
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 138, 15

Conread position: 33-527
Cow position:
Alignm length: 502
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 59

Conread position: 36-427
Cow position:
Alignm length: 405
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 26

Conread position: 42-436
Cow position:
Alignm length: 400
Alignm identity: 245
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 54, 58

Conread position: 45-274
Cow position:
Alignm length: 236
Alignm identity: 167
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 67, 17

Conread position: 61-427
Cow position:
Alignm length: 374
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 141

Conread position: 93-431
Cow position:
Alignm length: 340
Alignm identity: 139
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 220, 172

Conread position: 94-439
Cow position:
Alignm length: 351
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 52

Conread position: 100-508
Cow position:
Alignm length: 421
Alignm identity: 265
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 94, 102

Conread position: 104-301
Cow position:
Alignm length: 204
Alignm identity: 154
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 66, 96

Conread position: 104-408
Cow position:
Alignm length: 308
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 16

Conread position: 120-459
Cow position:
Alignm length: 344
Alignm identity: 226
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 109, 78

Conread position: 125-432
Cow position:
Alignm length: 311
Alignm identity: 202
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 35, 68

Conread position: 126-436
Cow position:
Alignm length: 321
Alignm identity: 233
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 58, 11

Conread position: 152-451
Cow position:
Alignm length: 302
Alignm identity: 207
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 18, 47

Conread position: 161-431
Cow position:
Alignm length: 274
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 37

Conread position: 167-431
Cow position:
Alignm length: 268
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 31

Conread position: 185-412
Cow position:
Alignm length: 236
Alignm identity: 164
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 39, 13

Conread position: 193-496
Cow position:
Alignm length: 317
Alignm identity: 208
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 38, 22

Conread position: 204-497
Cow position:
Alignm length: 301
Alignm identity: 198
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 14, 63

Conread position: 223-343
Cow position:
Alignm length: 122
Alignm identity: 101
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 90, 42

Conread position: 223-427
Cow position:
Alignm length: 206
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 42

Conread position: 225-427
Cow position:
Alignm length: 205
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 42

Conread position: 253-437
Cow position:
Alignm length: 187
Alignm identity: 136
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 31, 12

Conread position: 265-427
Cow position:
Alignm length: 167
Alignm identity: 137
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 19, 88

Conread position: 267-520
Cow position:
Alignm length: 258
Alignm identity: 182
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 47, 66

Conread position: 279-427
Cow position:
Alignm length: 150
Alignm identity: 126
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 36, 0

Conread position: 305-585
Cow position:
Alignm length: 282
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 112

Conread position: 310-437
Cow position:
Alignm length: 129
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 16, 24

Show alignments to all cow chromosomes.