Cow genome map

Conread name: Ss1.1-rplun0138_i19.5

Conread position: 1-135
Cow position:
Alignm length: 135
Alignm identity: 101
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 98, 0

Conread position: 1-207
Cow position:
Alignm length: 208
Alignm identity: 144
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 107, 120

Conread position: 1-282
Cow position:
Alignm length: 283
Alignm identity: 193
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 223, 40

Conread position: 1-410
Cow position:
Alignm length: 414
Alignm identity: 277
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 193, 61

Conread position: 1-416
Cow position:
Alignm length: 431
Alignm identity: 293
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 56, 63

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 160

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 140

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 50

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 104

Conread position: 1-433
Cow position:
Alignm length: 436
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 61

Conread position: 1-434
Cow position:
Alignm length: 436
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 109

Conread position: 1-436
Cow position:
Alignm length: 449
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 44

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-437
Cow position:
Alignm length: 440
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 61

Conread position: 1-437
Cow position:
Alignm length: 446
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 52

Conread position: 1-437
Cow position:
Alignm length: 439
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 36

Conread position: 1-437
Cow position:
Alignm length: 443
Alignm identity: 298
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 195, 43

Conread position: 1-437
Cow position:
Alignm length: 438
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 61

Conread position: 1-437
Cow position:
Alignm length: 440
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 61

Conread position: 1-437
Cow position:
Alignm length: 438
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 31

Conread position: 1-437
Cow position:
Alignm length: 440
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 61

Conread position: 1-437
Cow position:
Alignm length: 440
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 115

Conread position: 1-444
Cow position:
Alignm length: 447
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 22

Conread position: 1-444
Cow position:
Alignm length: 447
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 165

Conread position: 1-451
Cow position:
Alignm length: 456
Alignm identity: 299
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 223, 13

Conread position: 1-451
Cow position:
Alignm length: 454
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 61

Conread position: 1-505
Cow position:
Alignm length: 513
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 62

Conread position: 1-560
Cow position:
Alignm length: 565
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 43

Conread position: 1-567
Cow position:
Alignm length: 574
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 22

Conread position: 1-588
Cow position:
Alignm length: 591
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 61

Conread position: 2-357
Cow position:
Alignm length: 359
Alignm identity: 255
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 222, 18

Conread position: 2-431
Cow position:
Alignm length: 434
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-433
Cow position:
Alignm length: 433
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 34

Conread position: 2-436
Cow position:
Alignm length: 438
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-436
Cow position:
Alignm length: 438
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 2-437
Cow position:
Alignm length: 439
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 159

Conread position: 2-437
Cow position:
Alignm length: 439
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 176

Conread position: 2-440
Cow position:
Alignm length: 442
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 196

Conread position: 2-444
Cow position:
Alignm length: 446
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-455
Cow position:
Alignm length: 458
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 118

Conread position: 2-455
Cow position:
Alignm length: 459
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 196

Conread position: 2-457
Cow position:
Alignm length: 460
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 135

Conread position: 2-459
Cow position:
Alignm length: 466
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 60

Conread position: 2-463
Cow position:
Alignm length: 467
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position:
Alignm length: 467
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 34

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 60

Conread position: 2-463
Cow position:
Alignm length: 467
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-588
Cow position:
Alignm length: 591
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 117

Conread position: 3-260
Cow position:
Alignm length: 261
Alignm identity: 173
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 221, 57

Conread position: 3-423
Cow position:
Alignm length: 424
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 33

Conread position: 3-437
Cow position:
Alignm length: 438
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 59

Conread position: 3-525
Cow position:
Alignm length: 527
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 38

Conread position: 4-457
Cow position:
Alignm length: 467
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 40

Conread position: 4-517
Cow position:
Alignm length: 519
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 128

Conread position: 8-427
Cow position:
Alignm length: 423
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 190

Conread position: 8-427
Cow position:
Alignm length: 422
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-431
Cow position:
Alignm length: 426
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 28

Conread position: 8-436
Cow position:
Alignm length: 432
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 28

Conread position: 8-436
Cow position:
Alignm length: 436
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 190

Conread position: 8-437
Cow position:
Alignm length: 441
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 199

Conread position: 8-462
Cow position:
Alignm length: 460
Alignm identity: 297
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 164, 81

Conread position: 8-463
Cow position:
Alignm length: 472
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 56

Conread position: 9-156
Cow position:
Alignm length: 148
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 9-431
Cow position:
Alignm length: 425
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 54

Conread position: 9-434
Cow position:
Alignm length: 437
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 128

Conread position: 9-437
Cow position:
Alignm length: 434
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 88

Conread position: 9-453
Cow position:
Alignm length: 454
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 173

Conread position: 10-422
Cow position:
Alignm length: 417
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 190

Conread position: 11-282
Cow position:
Alignm length: 275
Alignm identity: 182
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 162, 149

Conread position: 17-497
Cow position:
Alignm length: 487
Alignm identity: 309
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 27, 48

Conread position: 21-444
Cow position:
Alignm length: 430
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 15

Conread position: 29-508
Cow position:
Alignm length: 484
Alignm identity: 322
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 197, 13

Conread position: 50-457
Cow position:
Alignm length: 413
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 142

Conread position: 50-499
Cow position:
Alignm length: 458
Alignm identity: 277
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 228, 105

Conread position: 50-520
Cow position:
Alignm length: 475
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 148

Conread position: 51-507
Cow position:
Alignm length: 467
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 85

Conread position: 63-437
Cow position:
Alignm length: 378
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 135

Conread position: 68-437
Cow position:
Alignm length: 375
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 30

Conread position: 68-520
Cow position:
Alignm length: 458
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 131

Conread position: 72-416
Cow position:
Alignm length: 349
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 69

Conread position: 77-325
Cow position:
Alignm length: 251
Alignm identity: 183
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 146, 121

Conread position: 85-431
Cow position:
Alignm length: 350
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 58

Conread position: 94-437
Cow position:
Alignm length: 348
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 48

Conread position: 100-437
Cow position:
Alignm length: 344
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 80

Conread position: 101-434
Cow position:
Alignm length: 336
Alignm identity: 228
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 123, 43

Conread position: 112-505
Cow position:
Alignm length: 407
Alignm identity: 272
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 23, 73

Conread position: 131-434
Cow position:
Alignm length: 309
Alignm identity: 219
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 90, 35

Conread position: 132-427
Cow position:
Alignm length: 301
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 28

Conread position: 161-330
Cow position:
Alignm length: 171
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 152, 38

Conread position: 172-447
Cow position:
Alignm length: 280
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 19

Conread position: 174-504
Cow position:
Alignm length: 335
Alignm identity: 230
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 50, 24

Conread position: 177-437
Cow position:
Alignm length: 263
Alignm identity: 180
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 110, 21

Conread position: 182-391
Cow position:
Alignm length: 213
Alignm identity: 158
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 42, 85

Conread position: 205-516
Cow position:
Alignm length: 320
Alignm identity: 218
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 19, 63

Conread position: 223-431
Cow position:
Alignm length: 210
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 37

Conread position: 223-437
Cow position:
Alignm length: 216
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 43

Conread position: 224-520
Cow position:
Alignm length: 299
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 5

Conread position: 226-427
Cow position:
Alignm length: 205
Alignm identity: 152
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 12, 40

Conread position: 245-422
Cow position:
Alignm length: 180
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 250-463
Cow position:
Alignm length: 216
Alignm identity: 158
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 63, 15

Conread position: 254-437
Cow position:
Alignm length: 185
Alignm identity: 144
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 60, 11

Conread position: 307-427
Cow position:
Alignm length: 122
Alignm identity: 98
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 314-426
Cow position:
Alignm length: 113
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 45, 0

Show alignments to all cow chromosomes.