Cow genome map

Conread name: Ss1.1-rplun0138_i19.5

Conread position: 1-135
Cow position: chr14:1500513-1500645 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 101
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 98, 0

Conread position: 1-207
Cow position: chr14:44580403-44580606 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 107, 120

Conread position: 1-282
Cow position: chr14:11468081-11468348 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 193
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 223, 40

Conread position: 1-410
Cow position: chr14:31887160-31887560 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 277
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 193, 61

Conread position: 1-416
Cow position: chr14:23260448-23260030 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 293
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 56, 63

Conread position: 1-427
Cow position: chr14:2283821-2284247 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 160

Conread position: 1-427
Cow position: chr14:9045047-9045474 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position: chr14:17491975-17491548 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position: chr14:23256841-23257267 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 140

Conread position: 1-427
Cow position: chr14:29048419-29047995 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 50

Conread position: 1-427
Cow position: chr14:33394294-33393868 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 104

Conread position: 1-433
Cow position: chr14:44130402-44130827 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 61

Conread position: 1-434
Cow position: chr14:45850707-45851137 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 109

Conread position: 1-436
Cow position: chr14:14309592-14309157 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 44

Conread position: 1-436
Cow position: chr14:23901319-23900883 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-437
Cow position: chr14:7831056-7830622 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 61

Conread position: 1-437
Cow position: chr14:13660505-13660068 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 52

Conread position: 1-437
Cow position: chr14:23690742-23690311 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 36

Conread position: 1-437
Cow position: chr14:27992822-27992397 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 298
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 195, 43

Conread position: 1-437
Cow position: chr14:44225891-44226315 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 61

Conread position: 1-437
Cow position: chr14:44855943-44855509 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 61

Conread position: 1-437
Cow position: chr14:45029631-45029207 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 31

Conread position: 1-437
Cow position: chr14:45712493-45712073 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 61

Conread position: 1-437
Cow position: chr14:47624051-47624471 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 115

Conread position: 1-444
Cow position: chr14:44422039-44422479 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 22

Conread position: 1-444
Cow position: chr14:45767488-45767926 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 165

Conread position: 1-451
Cow position: chr14:40170199-40169768 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 299
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 223, 13

Conread position: 1-451
Cow position: chr14:42151806-42152252 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 61

Conread position: 1-505
Cow position: chr14:35928659-35929160 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 62

Conread position: 1-560
Cow position: chr14:40339189-40339720 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 43

Conread position: 1-567
Cow position: chr14:46084107-46084665 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 22

Conread position: 1-588
Cow position: chr14:35387648-35387086 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 61

Conread position: 2-357
Cow position: chr14:41755345-41755682 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 255
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 222, 18

Conread position: 2-431
Cow position: chr14:17684878-17685307 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-433
Cow position: chr14:22032199-22031773 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 34

Conread position: 2-436
Cow position: chr14:16273813-16273380 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-436
Cow position: chr14:17001572-17001142 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 2-437
Cow position: chr14:37223385-37223819 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 159

Conread position: 2-437
Cow position: chr14:44685531-44685961 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 176

Conread position: 2-440
Cow position: chr14:20781939-20782377 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 196

Conread position: 2-444
Cow position: chr14:28994372-28993929 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-455
Cow position: chr14:13302513-13302965 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 118

Conread position: 2-455
Cow position: chr14:46464553-46465006 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 196

Conread position: 2-457
Cow position: chr14:13272741-13273187 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 135

Conread position: 2-459
Cow position: chr14:43552905-43553362 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 60

Conread position: 2-463
Cow position: chr14:5528544-5529007 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position: chr14:11154670-11154221 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 34

Conread position: 2-463
Cow position: chr14:15277095-15276635 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 60

Conread position: 2-463
Cow position: chr14:19328786-19328323 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-588
Cow position: chr14:45303879-45303299 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 117

Conread position: 3-260
Cow position: chr14:31607436-31607187 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 173
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 221, 57

Conread position: 3-423
Cow position: chr14:30585455-30585048 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 33

Conread position: 3-437
Cow position: chr14:36967740-36968173 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 59

Conread position: 3-525
Cow position: chr14:22018888-22019395 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 38

Conread position: 4-457
Cow position: chr14:50134557-50135014 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 40

Conread position: 4-517
Cow position: chr14:12608693-12609178 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 128

Conread position: 8-427
Cow position: chr14:750058-750478 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 190

Conread position: 8-427
Cow position: chr14:45672556-45672137 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-431
Cow position: chr14:7471865-7472279 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 28

Conread position: 8-436
Cow position: chr14:16920196-16919773 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 28

Conread position: 8-436
Cow position: chr14:41085294-41084864 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 190

Conread position: 8-437
Cow position: chr14:45205559-45205995 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 199

Conread position: 8-462
Cow position: chr14:38816710-38816265 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 297
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 164, 81

Conread position: 8-463
Cow position: chr14:48254822-48254360 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 56

Conread position: 9-156
Cow position: chr14:48824107-48824250 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 9-431
Cow position: chr14:13778456-13778866 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 54

Conread position: 9-434
Cow position: chr14:44376925-44377351 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 128

Conread position: 9-437
Cow position: chr14:30596891-30596466 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 88

Conread position: 9-453
Cow position: chr14:45833650-45834088 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 173

Conread position: 10-422
Cow position: chr14:38532804-38532389 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 190

Conread position: 11-282
Cow position: chr14:29265467-29265196 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 182
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 162, 149

Conread position: 17-497
Cow position: chr14:16845941-16846413 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 309
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 27, 48

Conread position: 21-444
Cow position: chr14:13864580-13864155 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 15

Conread position: 29-508
Cow position: chr14:9102583-9102134 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 322
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 197, 13

Conread position: 50-457
Cow position: chr14:50110102-50110506 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 142

Conread position: 50-499
Cow position: chr14:42554272-42553820 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 277
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 228, 105

Conread position: 50-520
Cow position: chr14:41407352-41407817 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 148

Conread position: 51-507
Cow position: chr14:43034352-43033904 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 85

Conread position: 63-437
Cow position: chr14:44287707-44287332 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 135

Conread position: 68-437
Cow position: chr14:45916965-45917336 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 30

Conread position: 68-520
Cow position: chr14:37414340-37413896 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 131

Conread position: 72-416
Cow position: chr14:13480175-13479836 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 69

Conread position: 77-325
Cow position: chr14:45080078-45080325 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 183
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 146, 121

Conread position: 85-431
Cow position: chr14:5511389-5511733 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 58

Conread position: 94-437
Cow position: chr14:19619800-19620138 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 48

Conread position: 100-437
Cow position: chr14:22242463-22242799 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 80

Conread position: 101-434
Cow position: chr14:48406103-48405774 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 228
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 123, 43

Conread position: 112-505
Cow position: chr14:47654323-47654723 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 272
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 23, 73

Conread position: 131-434
Cow position: chr14:34775142-34775442 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 219
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 90, 35

Conread position: 132-427
Cow position: chr14:44551497-44551790 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 28

Conread position: 161-330
Cow position: chr14:42198233-42198400 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 152, 38

Conread position: 172-447
Cow position: chr14:45771122-45770852 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 19

Conread position: 174-504
Cow position: chr14:38146238-38146561 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 230
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 50, 24

Conread position: 177-437
Cow position: chr14:38040540-38040794 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 180
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 110, 21

Conread position: 182-391
Cow position: chr14:48824244-48824455 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 42, 85

Conread position: 205-516
Cow position: chr14:44580641-44580944 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 218
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 19, 63

Conread position: 223-431
Cow position: chr14:45160802-45161008 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 37

Conread position: 223-437
Cow position: chr14:5201377-5201163 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 43

Conread position: 224-520
Cow position: chr14:33675517-33675813 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 5

Conread position: 226-427
Cow position: chr14:13621442-13621239 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 152
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 12, 40

Conread position: 245-422
Cow position: chr14:29225686-29225507 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 250-463
Cow position: chr14:12743337-12743123 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 63, 15

Conread position: 254-437
Cow position: chr14:45565064-45565246 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 144
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 60, 11

Conread position: 307-427
Cow position: chr14:43557223-43557344 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 314-426
Cow position: chr14:45080841-45080952 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 45, 0

Show alignments to all cow chromosomes.