Cow genome map

Conread name: Ss1.1-rplun0138_i19.5

Conread position: 1-139
Cow position: chr16:4442010-4442149 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 79, 0

Conread position: 1-167
Cow position: chr16:7905779-7905946 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 54, 0

Conread position: 1-214
Cow position: chr16:52815497-52815290 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 176, 61

Conread position: 1-241
Cow position: chr16:29676169-29675934 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 184
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 222, 96

Conread position: 1-270
Cow position: chr16:32605964-32606233 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-271
Cow position: chr16:44388443-44388172 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 187
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 215, 160

Conread position: 1-279
Cow position: chr16:54647463-54647728 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 188
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 131, 0

Conread position: 1-314
Cow position: chr16:4303334-4303029 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 58

Conread position: 1-334
Cow position: chr16:40887118-40886791 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 237
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 223, 61

Conread position: 1-370
Cow position: chr16:36232469-36232110 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 62

Conread position: 1-372
Cow position: chr16:5651888-5652243 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 256
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 282, 77

Conread position: 1-395
Cow position: chr16:42051235-42050857 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 30

Conread position: 1-419
Cow position: chr16:5918621-5919037 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 160

Conread position: 1-422
Cow position: chr16:36362213-36361805 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 61

Conread position: 1-427
Cow position: chr16:5660997-5661412 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 91

Conread position: 1-427
Cow position: chr16:25187778-25188204 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 197

Conread position: 1-427
Cow position: chr16:28171222-28170801 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 22

Conread position: 1-428
Cow position: chr16:41559809-41560214 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 297
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 223, 12

Conread position: 1-431
Cow position: chr16:31884-32304 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 118

Conread position: 1-431
Cow position: chr16:11052304-11052726 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 63

Conread position: 1-435
Cow position: chr16:6942759-6943202 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-436
Cow position: chr16:47562822-47563263 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 86

Conread position: 1-437
Cow position: chr16:20255174-20254739 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 137

Conread position: 1-437
Cow position: chr16:39820771-39821202 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 115

Conread position: 1-463
Cow position: chr16:10808299-10808750 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 35

Conread position: 1-522
Cow position: chr16:31376119-31375625 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 42

Conread position: 1-524
Cow position: chr16:335435-335943 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 38

Conread position: 1-588
Cow position: chr16:25157082-25156501 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 61

Conread position: 1-588
Cow position: chr16:42740279-42739700 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 22

Conread position: 2-187
Cow position: chr16:24881551-24881369 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 18, 0

Conread position: 2-265
Cow position: chr16:18687982-18687724 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 195
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 222, 46

Conread position: 2-413
Cow position: chr16:27734667-27734253 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-423
Cow position: chr16:23982449-23982868 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 99

Conread position: 2-431
Cow position: chr16:1568316-1567889 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 60

Conread position: 2-431
Cow position: chr16:2239596-2239174 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 76

Conread position: 2-431
Cow position: chr16:8816968-8816539 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position: chr16:12538787-12538360 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position: chr16:14666693-14666264 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position: chr16:23253366-23252942 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 49

Conread position: 2-431
Cow position: chr16:25341106-25341530 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 52

Conread position: 2-431
Cow position: chr16:25440756-25441189 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 60

Conread position: 2-431
Cow position: chr16:25458333-25457900 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 60

Conread position: 2-431
Cow position: chr16:28471958-28471537 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 196

Conread position: 2-437
Cow position: chr16:6549384-6548952 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 60

Conread position: 2-437
Cow position: chr16:34529463-34529893 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 102

Conread position: 2-454
Cow position: chr16:25084760-25085207 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 60

Conread position: 2-454
Cow position: chr16:51685571-51686022 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 148

Conread position: 2-457
Cow position: chr16:836166-836623 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 133

Conread position: 2-459
Cow position: chr16:36282538-36282991 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 49

Conread position: 2-460
Cow position: chr16:2728177-2727693 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 154

Conread position: 2-463
Cow position: chr16:407895-407433 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 66

Conread position: 2-463
Cow position: chr16:10204276-10203831 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 34

Conread position: 2-463
Cow position: chr16:15183940-15184402 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position: chr16:26662885-26663348 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position: chr16:29046158-29046621 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position: chr16:40297038-40296579 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 138

Conread position: 2-488
Cow position: chr16:2411832-2411355 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 60

Conread position: 2-497
Cow position: chr16:15565888-15566376 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 35

Conread position: 3-191
Cow position: chr16:30047663-30047850 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 132
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 32, 61

Conread position: 3-261
Cow position: chr16:1430366-1430619 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 194
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 221, 40

Conread position: 3-296
Cow position: chr16:5888621-5888896 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 211
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 52, 61

Conread position: 3-432
Cow position: chr16:56551267-56551688 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 69

Conread position: 3-463
Cow position: chr16:43898130-43897672 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 197

Conread position: 4-464
Cow position: chr16:15491847-15492308 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 139

Conread position: 4-525
Cow position: chr16:9929685-9930194 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 58

Conread position: 8-437
Cow position: chr16:2483996-2483570 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 117

Conread position: 8-465
Cow position: chr16:5483465-5483924 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 9-299
Cow position: chr16:16276360-16276074 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 53

Conread position: 9-457
Cow position: chr16:31592761-31592313 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 190

Conread position: 9-463
Cow position: chr16:24155297-24154844 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 128

Conread position: 9-553
Cow position: chr16:49257434-49256896 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 34

Conread position: 10-436
Cow position: chr16:28438639-28438215 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 277
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 161, 127

Conread position: 40-414
Cow position: chr16:11639107-11639489 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 258
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 28, 24

Conread position: 49-243
Cow position: chr16:29032343-29032537 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 174, 112

Conread position: 49-440
Cow position: chr16:16029971-16030359 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 91

Conread position: 50-501
Cow position: chr16:24454399-24453940 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 286
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 36, 15

Conread position: 52-525
Cow position: chr16:32935345-32935829 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 110

Conread position: 54-410
Cow position: chr16:10437431-10437788 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 144

Conread position: 76-437
Cow position: chr16:19713676-19713317 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 124

Conread position: 98-456
Cow position: chr16:29982681-29983024 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 245
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 66, 45

Conread position: 100-508
Cow position: chr16:33611845-33611433 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 279
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 124, 98

Conread position: 101-417
Cow position: chr16:9777319-9777637 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 91

Conread position: 105-436
Cow position: chr16:53045592-53045925 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 93

Conread position: 111-437
Cow position: chr16:13002354-13002673 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 213
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 113, 64

Conread position: 129-517
Cow position: chr16:6966993-6967369 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 259
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 95, 69

Conread position: 138-433
Cow position: chr16:44966444-44966734 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 206
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 32, 61

Conread position: 149-581
Cow position: chr16:49235862-49235434 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 17

Conread position: 173-447
Cow position: chr16:7905928-7906202 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 25

Conread position: 200-496
Cow position: chr16:18500014-18499722 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 67

Conread position: 223-466
Cow position: chr16:30047851-30048095 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 178
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 96, 37

Conread position: 228-437
Cow position: chr16:23670264-23670062 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 88, 37

Conread position: 228-522
Cow position: chr16:52815124-52814834 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 40

Conread position: 242-578
Cow position: chr16:29033094-29033425 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 23

Conread position: 250-427
Cow position: chr16:31832016-31832194 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 147
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 65, 17

Conread position: 265-437
Cow position: chr16:25153129-25153295 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 265-504
Cow position: chr16:48626633-48626864 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 49, 81

Conread position: 302-569
Cow position: chr16:16273398-16273132 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 191
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 12, 73

Conread position: 304-413
Cow position: chr16:4302890-4302780 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 305-434
Cow position: chr16:29675939-29675810 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 311-588
Cow position: chr16:25257050-25257325 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 193
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 154, 0

Conread position: 339-549
Cow position: chr16:5889392-5889599 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 26, 123

Conread position: 355-520
Cow position: chr16:23807458-23807624 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 38, 87

Show alignments to all cow chromosomes.