Cow genome map
| Conread name: | Ss1.1-rplun0138_i19.5 |
| Conread position: | 1-190 |
| Cow position: | chr17:15370790-15370974 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 1-312 |
| Cow position: | chr17:22160629-22160940 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-324 |
| Cow position: | chr17:14308589-14308276 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 171, 90 |
| Conread position: | 1-357 |
| Cow position: | chr17:24780761-24781117 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-420 |
| Cow position: | chr17:2588044-2588438 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 34 |
| Conread position: | 1-426 |
| Cow position: | chr17:20183514-20183095 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 61 |
| Conread position: | 1-427 |
| Cow position: | chr17:2261823-2262242 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 81 |
| Conread position: | 1-427 |
| Cow position: | chr17:8208820-8209246 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 196 |
| Conread position: | 1-427 |
| Cow position: | chr17:15435504-15435931 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-427 |
| Cow position: | chr17:20666013-20665586 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-431 |
| Cow position: | chr17:27345518-27345941 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 180 |
| Conread position: | 1-435 |
| Cow position: | chr17:15143656-15143219 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 199 |
| Conread position: | 1-435 |
| Cow position: | chr17:15157248-15156816 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 61 |
| Conread position: | 1-436 |
| Cow position: | chr17:1383101-1382663 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-436 |
| Cow position: | chr17:2248868-2248435 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 124 |
| Conread position: | 1-436 |
| Cow position: | chr17:6089448-6089012 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-436 |
| Cow position: | chr17:24633667-24634103 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-437 |
| Cow position: | chr17:1946691-1947119 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 137 |
| Conread position: | 1-437 |
| Cow position: | chr17:2287102-2287536 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 77 |
| Conread position: | 1-437 |
| Cow position: | chr17:14217311-14216872 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-437 |
| Cow position: | chr17:22131947-22132378 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 58 |
| Conread position: | 1-437 |
| Cow position: | chr17:22429769-22429338 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 123 |
| Conread position: | 1-437 |
| Cow position: | chr17:35591928-35592364 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 135 |
| Conread position: | 1-440 |
| Cow position: | chr17:228588-228156 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 58 |
| Conread position: | 1-447 |
| Cow position: | chr17:23857321-23856873 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 61 |
| Conread position: | 1-455 |
| Cow position: | chr17:20088017-20087582 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 81 |
| Conread position: | 1-457 |
| Cow position: | chr17:2173592-2174046 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 152 |
| Conread position: | 1-457 |
| Cow position: | chr17:44853222-44852764 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 200 |
| Conread position: | 1-458 |
| Cow position: | chr17:16889838-16890295 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 61 |
| Conread position: | 1-459 |
| Cow position: | chr17:152757-152302 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 30 |
| Conread position: | 1-462 |
| Cow position: | chr17:9653743-9653282 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-516 |
| Cow position: | chr17:20401397-20401888 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 15 |
| Conread position: | 1-525 |
| Cow position: | chr17:4295080-4295579 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 91 |
| Conread position: | 1-578 |
| Cow position: | chr17:14325781-14325224 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 61 |
| Conread position: | 2-177 |
| Cow position: | chr17:2579273-2579446 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 2-196 |
| Cow position: | chr17:28109800-28109995 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 179, 60 |
| Conread position: | 2-395 |
| Cow position: | chr17:249629-250047 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 217 |
| Conread position: | 2-404 |
| Cow position: | chr17:16859842-16859451 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-427 |
| Cow position: | chr17:1879806-1880234 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 196 |
| Conread position: | 2-431 |
| Cow position: | chr17:15850112-15850540 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 52 |
| Conread position: | 2-431 |
| Cow position: | chr17:19269652-19269223 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-431 |
| Cow position: | chr17:25737377-25737806 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-437 |
| Cow position: | chr17:4059822-4060249 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 17 |
| Conread position: | 2-437 |
| Cow position: | chr17:13857055-13856621 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-460 |
| Cow position: | chr17:6259559-6260017 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-463 |
| Cow position: | chr17:3643122-3642660 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 191 |
| Conread position: | 2-463 |
| Cow position: | chr17:14893875-14894330 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 3-126 |
| Cow position: | chr17:2738093-2738216 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-427 |
| Cow position: | chr17:43988250-43988673 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 197 |
| Conread position: | 3-437 |
| Cow position: | chr17:18185809-18185385 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 91 |
| Conread position: | 6-396 |
| Cow position: | chr17:4286809-4287187 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 22, 99 |
| Conread position: | 8-263 |
| Cow position: | chr17:15322542-15322785 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 216, 28 |
| Conread position: | 8-431 |
| Cow position: | chr17:11088004-11087581 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 190 |
| Conread position: | 8-449 |
| Cow position: | chr17:18103960-18103522 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 190 |
| Conread position: | 8-494 |
| Cow position: | chr17:1658849-1658359 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 35 |
| Conread position: | 9-467 |
| Cow position: | chr17:13929389-13929851 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 189 |
| Conread position: | 9-506 |
| Cow position: | chr17:6002290-6001802 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 57 |
| Conread position: | 9-518 |
| Cow position: | chr17:4081370-4081866 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 53 |
| Conread position: | 18-437 |
| Cow position: | chr17:18027027-18026607 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 170 |
| Conread position: | 26-407 |
| Cow position: | chr17:2555861-2556242 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 172 |
| Conread position: | 44-427 |
| Cow position: | chr17:23324698-23324314 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 82 |
| Conread position: | 63-318 |
| Cow position: | chr17:12670672-12670423 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 47, 58 |
| Conread position: | 67-437 |
| Cow position: | chr17:7944696-7944332 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 81, 18 |
| Conread position: | 98-423 |
| Cow position: | chr17:16418024-16417701 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 228 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 110, 100 |
| Conread position: | 101-496 |
| Cow position: | chr17:12780810-12780418 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 125, 29 |
| Conread position: | 101-513 |
| Cow position: | chr17:40834568-40834960 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 123, 40 |
| Conread position: | 113-431 |
| Cow position: | chr17:2579457-2579758 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 231 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 111, 43 |
| Conread position: | 115-427 |
| Cow position: | chr17:181190-181503 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 83 |
| Conread position: | 144-517 |
| Cow position: | chr17:18325135-18324765 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 82, 41 |
| Conread position: | 161-431 |
| Cow position: | chr17:40804689-40804960 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 37 |
| Conread position: | 184-460 |
| Cow position: | chr17:2147072-2147347 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 130, 61 |
| Conread position: | 189-447 |
| Cow position: | chr17:602523-602279 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 35, 10 |
| Conread position: | 219-520 |
| Cow position: | chr17:3709271-3708976 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 100, 11 |
| Conread position: | 223-383 |
| Cow position: | chr17:26205871-26205711 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 92, 44 |
| Conread position: | 223-575 |
| Cow position: | chr17:15370986-15371335 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 42 |
| Conread position: | 224-410 |
| Cow position: | chr17:6068571-6068753 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 89, 33 |
| Conread position: | 229-437 |
| Cow position: | chr17:1283763-1283555 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 36 |
| Conread position: | 250-450 |
| Cow position: | chr17:22557583-22557786 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 14, 85 |
| Conread position: | 253-427 |
| Cow position: | chr17:43952596-43952423 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 62, 13 |
| Conread position: | 257-427 |
| Cow position: | chr17:31768069-31767899 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 142 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 58, 8 |
| Conread position: | 260-431 |
| Cow position: | chr17:15323218-15323388 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 53, 81 |
| Conread position: | 279-414 |
| Cow position: | chr17:36987680-36987546 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 37, 124 |
| Conread position: | 279-427 |
| Cow position: | chr17:34156119-34156268 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 289-444 |
| Cow position: | chr17:14041044-14040889 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 25, 63 |
| Conread position: | 296-407 |
| Cow position: | chr17:602691-602803 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
Show alignments to all cow chromosomes.