Cow genome map

Conread name: Ss1.1-rplun0138_i19.5

Conread position: 1-190
Cow position:
Alignm length: 190
Alignm identity: 139
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 87, 0

Conread position: 1-312
Cow position:
Alignm length: 314
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-324
Cow position:
Alignm length: 328
Alignm identity: 219
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 171, 90

Conread position: 1-357
Cow position:
Alignm length: 360
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-420
Cow position:
Alignm length: 425
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 34

Conread position: 1-426
Cow position:
Alignm length: 429
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 61

Conread position: 1-427
Cow position:
Alignm length: 431
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 81

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 196

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-431
Cow position:
Alignm length: 433
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 180

Conread position: 1-435
Cow position:
Alignm length: 440
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 199

Conread position: 1-435
Cow position:
Alignm length: 438
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 61

Conread position: 1-436
Cow position:
Alignm length: 441
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 124

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-437
Cow position:
Alignm length: 440
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 137

Conread position: 1-437
Cow position:
Alignm length: 440
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 77

Conread position: 1-437
Cow position:
Alignm length: 442
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-437
Cow position:
Alignm length: 440
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 58

Conread position: 1-437
Cow position:
Alignm length: 446
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 123

Conread position: 1-437
Cow position:
Alignm length: 441
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 135

Conread position: 1-440
Cow position:
Alignm length: 443
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 58

Conread position: 1-447
Cow position:
Alignm length: 453
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 61

Conread position: 1-455
Cow position:
Alignm length: 458
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 81

Conread position: 1-457
Cow position:
Alignm length: 460
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 152

Conread position: 1-457
Cow position:
Alignm length: 463
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 200

Conread position: 1-458
Cow position:
Alignm length: 468
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 61

Conread position: 1-459
Cow position:
Alignm length: 475
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 30

Conread position: 1-462
Cow position:
Alignm length: 465
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-516
Cow position:
Alignm length: 521
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 15

Conread position: 1-525
Cow position:
Alignm length: 528
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 91

Conread position: 1-578
Cow position:
Alignm length: 582
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 61

Conread position: 2-177
Cow position:
Alignm length: 176
Alignm identity: 129
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 18, 0

Conread position: 2-196
Cow position:
Alignm length: 198
Alignm identity: 151
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 179, 60

Conread position: 2-395
Cow position:
Alignm length: 422
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 217

Conread position: 2-404
Cow position:
Alignm length: 405
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-427
Cow position:
Alignm length: 432
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 196

Conread position: 2-431
Cow position:
Alignm length: 437
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 52

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-437
Cow position:
Alignm length: 439
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 17

Conread position: 2-437
Cow position:
Alignm length: 439
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-460
Cow position:
Alignm length: 462
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position:
Alignm length: 465
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 191

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 3-126
Cow position:
Alignm length: 124
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 3-427
Cow position:
Alignm length: 430
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 197

Conread position: 3-437
Cow position:
Alignm length: 439
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 91

Conread position: 6-396
Cow position:
Alignm length: 396
Alignm identity: 270
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 22, 99

Conread position: 8-263
Cow position:
Alignm length: 258
Alignm identity: 191
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 216, 28

Conread position: 8-431
Cow position:
Alignm length: 427
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-449
Cow position:
Alignm length: 446
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-494
Cow position:
Alignm length: 502
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 35

Conread position: 9-467
Cow position:
Alignm length: 465
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 189

Conread position: 9-506
Cow position:
Alignm length: 502
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 57

Conread position: 9-518
Cow position:
Alignm length: 521
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 53

Conread position: 18-437
Cow position:
Alignm length: 423
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 170

Conread position: 26-407
Cow position:
Alignm length: 385
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 172

Conread position: 44-427
Cow position:
Alignm length: 388
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 82

Conread position: 63-318
Cow position:
Alignm length: 260
Alignm identity: 176
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 47, 58

Conread position: 67-437
Cow position:
Alignm length: 376
Alignm identity: 240
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 81, 18

Conread position: 98-423
Cow position:
Alignm length: 330
Alignm identity: 228
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 110, 100

Conread position: 101-496
Cow position:
Alignm length: 405
Alignm identity: 255
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 125, 29

Conread position: 101-513
Cow position:
Alignm length: 417
Alignm identity: 268
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 123, 40

Conread position: 113-431
Cow position:
Alignm length: 322
Alignm identity: 231
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 111, 43

Conread position: 115-427
Cow position:
Alignm length: 316
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 83

Conread position: 144-517
Cow position:
Alignm length: 380
Alignm identity: 257
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 82, 41

Conread position: 161-431
Cow position:
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 37

Conread position: 184-460
Cow position:
Alignm length: 283
Alignm identity: 199
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 130, 61

Conread position: 189-447
Cow position:
Alignm length: 262
Alignm identity: 196
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 35, 10

Conread position: 219-520
Cow position:
Alignm length: 307
Alignm identity: 206
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 100, 11

Conread position: 223-383
Cow position:
Alignm length: 162
Alignm identity: 132
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 92, 44

Conread position: 223-575
Cow position:
Alignm length: 355
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 42

Conread position: 224-410
Cow position:
Alignm length: 190
Alignm identity: 135
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 89, 33

Conread position: 229-437
Cow position:
Alignm length: 210
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 36

Conread position: 250-450
Cow position:
Alignm length: 206
Alignm identity: 152
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 14, 85

Conread position: 253-427
Cow position:
Alignm length: 176
Alignm identity: 143
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 62, 13

Conread position: 257-427
Cow position:
Alignm length: 172
Alignm identity: 142
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 58, 8

Conread position: 260-431
Cow position:
Alignm length: 173
Alignm identity: 133
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 53, 81

Conread position: 279-414
Cow position:
Alignm length: 137
Alignm identity: 113
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 37, 124

Conread position: 279-427
Cow position:
Alignm length: 150
Alignm identity: 126
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 36, 0

Conread position: 289-444
Cow position:
Alignm length: 157
Alignm identity: 112
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 25, 63

Conread position: 296-407
Cow position:
Alignm length: 113
Alignm identity: 92
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 0

Show alignments to all cow chromosomes.