Cow genome map
| Conread name: | Ss1.1-rplun0138_i19.5 |
| Conread position: | 1-126 |
| Cow position: | chr18:22869676-22869801 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-144 |
| Cow position: | chr18:51660338-51660481 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-237 |
| Cow position: | chr18:44621680-44621917 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 96, 89 |
| Conread position: | 1-243 |
| Cow position: | chr18:17992641-17992401 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 221, 87 |
| Conread position: | 1-255 |
| Cow position: | chr18:35288453-35288714 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 151, 27 |
| Conread position: | 1-330 |
| Cow position: | chr18:43200984-43201305 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 35 |
| Conread position: | 1-413 |
| Cow position: | chr18:16393720-16393312 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 282 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 221, 103 |
| Conread position: | 1-423 |
| Cow position: | chr18:51341607-51342030 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-427 |
| Cow position: | chr18:19352307-19352730 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 67 |
| Conread position: | 1-427 |
| Cow position: | chr18:33358788-33359213 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-427 |
| Cow position: | chr18:43147003-43146578 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 61 |
| Conread position: | 1-427 |
| Cow position: | chr18:47741939-47742366 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-427 |
| Cow position: | chr18:51310503-51310931 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 61 |
| Conread position: | 1-431 |
| Cow position: | chr18:23944450-23944024 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 61 |
| Conread position: | 1-431 |
| Cow position: | chr18:35335410-35335831 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 98 |
| Conread position: | 1-431 |
| Cow position: | chr18:55089004-55088573 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-436 |
| Cow position: | chr18:22602408-22602844 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-436 |
| Cow position: | chr18:33953646-33953218 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 38 |
| Conread position: | 1-436 |
| Cow position: | chr18:51689547-51689981 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 148 |
| Conread position: | 1-437 |
| Cow position: | chr18:1521052-1521503 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 109 |
| Conread position: | 1-437 |
| Cow position: | chr18:16078620-16079077 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 215 |
| Conread position: | 1-437 |
| Cow position: | chr18:32293696-32294116 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 35 |
| Conread position: | 1-437 |
| Cow position: | chr18:33268762-33269183 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 1-437 |
| Cow position: | chr18:39748499-39748935 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 61 |
| Conread position: | 1-437 |
| Cow position: | chr18:54044780-54044365 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 62 |
| Conread position: | 1-440 |
| Cow position: | chr18:48221798-48222239 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 199 |
| Conread position: | 1-440 |
| Cow position: | chr18:53785760-53786198 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 62 |
| Conread position: | 1-444 |
| Cow position: | chr18:2019765-2019322 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-447 |
| Cow position: | chr18:6869337-6868890 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 139 |
| Conread position: | 1-457 |
| Cow position: | chr18:51257904-51258362 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 34 |
| Conread position: | 1-458 |
| Cow position: | chr18:16533900-16534359 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 124 |
| Conread position: | 1-520 |
| Cow position: | chr18:2887100-2886580 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 197 |
| Conread position: | 1-522 |
| Cow position: | chr18:37599606-37599101 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 61 |
| Conread position: | 2-196 |
| Cow position: | chr18:27986950-27987143 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 2-238 |
| Cow position: | chr18:16660082-16659846 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 42 |
| Conread position: | 2-424 |
| Cow position: | chr18:33335790-33336207 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 108 |
| Conread position: | 2-431 |
| Cow position: | chr18:27838381-27837966 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 72 |
| Conread position: | 2-431 |
| Cow position: | chr18:51480759-51481190 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 198 |
| Conread position: | 2-437 |
| Cow position: | chr18:23797571-23798005 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 60 |
| Conread position: | 2-453 |
| Cow position: | chr18:16176685-16176247 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 46 |
| Conread position: | 2-457 |
| Cow position: | chr18:9186843-9186396 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 37 |
| Conread position: | 2-460 |
| Cow position: | chr18:40478305-40478764 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 136 |
| Conread position: | 2-463 |
| Cow position: | chr18:14415898-14416360 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-463 |
| Cow position: | chr18:36508255-36508717 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 195 |
| Conread position: | 2-463 |
| Cow position: | chr18:41840903-41840440 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-585 |
| Cow position: | chr18:54171921-54171358 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 60 |
| Conread position: | 3-434 |
| Cow position: | chr18:16877405-16877823 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 291 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 131, 10 |
| Conread position: | 8-426 |
| Cow position: | chr18:28973975-28973556 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 190 |
| Conread position: | 8-431 |
| Cow position: | chr18:37504991-37505414 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 190 |
| Conread position: | 9-435 |
| Cow position: | chr18:5980371-5980785 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 103 |
| Conread position: | 9-578 |
| Cow position: | chr18:29236746-29237307 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 27 |
| Conread position: | 10-361 |
| Cow position: | chr18:54024420-54024078 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 44 |
| Conread position: | 12-427 |
| Cow position: | chr18:11275174-11274758 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 186 |
| Conread position: | 21-455 |
| Cow position: | chr18:14130330-14130759 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 113 |
| Conread position: | 25-504 |
| Cow position: | chr18:36258411-36257932 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 326 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 108, 26 |
| Conread position: | 39-437 |
| Cow position: | chr18:47719624-47719226 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 35 |
| Conread position: | 39-460 |
| Cow position: | chr18:52650890-52651300 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 82 |
| Conread position: | 49-371 |
| Cow position: | chr18:20832812-20833129 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 174, 89 |
| Conread position: | 50-414 |
| Cow position: | chr18:36484215-36484580 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 119, 73 |
| Conread position: | 60-362 |
| Cow position: | chr18:18897476-18897776 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 112, 76 |
| Conread position: | 63-401 |
| Cow position: | chr18:114377-114711 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 48 |
| Conread position: | 67-428 |
| Cow position: | chr18:16864060-16864404 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 159, 67 |
| Conread position: | 89-347 |
| Cow position: | chr18:25350673-25350933 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 110 |
| Conread position: | 92-427 |
| Cow position: | chr18:24040721-24040384 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 106 |
| Conread position: | 98-427 |
| Cow position: | chr18:51463057-51462731 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 100 |
| Conread position: | 104-437 |
| Cow position: | chr18:19539556-19539227 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 84 |
| Conread position: | 111-359 |
| Cow position: | chr18:32652251-32652499 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 58 |
| Conread position: | 123-453 |
| Cow position: | chr18:36211070-36210745 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 106, 20 |
| Conread position: | 152-525 |
| Cow position: | chr18:16843264-16842895 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 46 |
| Conread position: | 157-384 |
| Cow position: | chr18:18089396-18089171 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 67, 41 |
| Conread position: | 179-457 |
| Cow position: | chr18:54003616-54003900 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 216 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 45, 19 |
| Conread position: | 193-437 |
| Cow position: | chr18:16722628-16722385 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 70 |
| Conread position: | 223-456 |
| Cow position: | chr18:27987204-27987434 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 92, 42 |
| Conread position: | 227-437 |
| Cow position: | chr18:17992273-17992063 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 40 |
| Conread position: | 231-402 |
| Cow position: | chr18:45958870-45959039 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 83, 34 |
| Conread position: | 248-525 |
| Cow position: | chr18:29763539-29763809 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 66, 17 |
| Conread position: | 279-577 |
| Cow position: | chr18:56462704-56462411 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 146 |
| Conread position: | 290-437 |
| Cow position: | chr18:24700905-24700755 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 307-521 |
| Cow position: | chr18:35289547-35289759 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 148, 6 |
Show alignments to all cow chromosomes.