Cow genome map


           Conread name:
           Ss1.1-rplun0138_i19.5
        

               Conread position:
               1-147
               

               Cow position:
               
               

               Alignm length:
               147
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               1-181
               

               Cow position:
               
               

               Alignm length:
               181
               

               Alignm identity:
               129
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               143, 0
               

               Conread position:
               1-181
               

               Cow position:
               
               

               Alignm length:
               181
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               1-203
               

               Cow position:
               
               

               Alignm length:
               204
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               171, 198
               

               Conread position:
               1-206
               

               Cow position:
               
               

               Alignm length:
               207
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               171, 61
               

               Conread position:
               1-214
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               168
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               1-237
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 137
               

               Conread position:
               1-275
               

               Cow position:
               
               

               Alignm length:
               277
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               223, 62
               

               Conread position:
               1-300
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 160
               

               Conread position:
               1-323
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               280, 197
               

               Conread position:
               1-329
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               219, 197
               

               Conread position:
               1-390
               

               Cow position:
               
               

               Alignm length:
               391
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               313, 176
               

               Conread position:
               1-392
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 197
               

               Conread position:
               1-417
               

               Cow position:
               
               

               Alignm length:
               420
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 197
               

               Conread position:
               1-423
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 263
               

               Conread position:
               1-427
               

               Cow position:
               
               

               Alignm length:
               430
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 197
               

               Conread position:
               1-427
               

               Cow position:
               
               

               Alignm length:
               430
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 197
               

               Conread position:
               1-427
               

               Cow position:
               
               

               Alignm length:
               430
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 184
               

               Conread position:
               1-427
               

               Cow position:
               
               

               Alignm length:
               430
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 198
               

               Conread position:
               1-431
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               189, 61
               

               Conread position:
               1-437
               

               Cow position:
               
               

               Alignm length:
               449
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 158
               

               Conread position:
               1-437
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 197
               

               Conread position:
               1-437
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 164
               

               Conread position:
               1-455
               

               Cow position:
               
               

               Alignm length:
               463
               

               Alignm identity:
               289
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               44, 31
               

               Conread position:
               1-463
               

               Cow position:
               
               

               Alignm length:
               467
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 142
               

               Conread position:
               1-487
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 61
               

               Conread position:
               1-520
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 103
               

               Conread position:
               1-571
               

               Cow position:
               
               

               Alignm length:
               573
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               312, 142
               

               Conread position:
               2-296
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 197
               

               Conread position:
               2-335
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               166, 159
               

               Conread position:
               2-360
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 58
               

               Conread position:
               2-414
               

               Cow position:
               
               

               Alignm length:
               420
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 81
               

               Conread position:
               2-417
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               311, 60
               

               Conread position:
               2-422
               

               Cow position:
               
               

               Alignm length:
               423
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 118
               

               Conread position:
               2-431
               

               Cow position:
               
               

               Alignm length:
               433
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 60
               

               Conread position:
               2-431
               

               Cow position:
               
               

               Alignm length:
               433
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 120
               

               Conread position:
               2-436
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 118
               

               Conread position:
               2-437
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 196
               

               Conread position:
               2-456
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 60
               

               Conread position:
               2-458
               

               Cow position:
               
               

               Alignm length:
               459
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               313, 196
               

               Conread position:
               2-460
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 34
               

               Conread position:
               2-460
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 196
               

               Conread position:
               2-463
               

               Cow position:
               
               

               Alignm length:
               464
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               332, 196
               

               Conread position:
               3-312
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 178
               

               Conread position:
               3-520
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 40
               

               Conread position:
               5-362
               

               Cow position:
               
               

               Alignm length:
               365
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 21
               

               Conread position:
               5-505
               

               Cow position:
               
               

               Alignm length:
               505
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               217, 67
               

               Conread position:
               8-463
               

               Cow position:
               
               

               Alignm length:
               459
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 190
               

               Conread position:
               10-292
               

               Cow position:
               
               

               Alignm length:
               285
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 188
               

               Conread position:
               21-322
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               202, 41
               

               Conread position:
               45-395
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 17
               

               Conread position:
               58-520
               

               Cow position:
               
               

               Alignm length:
               466
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 21
               

               Conread position:
               75-427
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 23
               

               Conread position:
               75-440
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               195, 69
               

               Conread position:
               93-427
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 105
               

               Conread position:
               94-432
               

               Cow position:
               
               

               Alignm length:
               342
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 28
               

               Conread position:
               101-588
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               331
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               123, 32
               

               Conread position:
               112-410
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 31
               

               Conread position:
               116-451
               

               Cow position:
               
               

               Alignm length:
               341
               

               Alignm identity:
               216
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               107, 83
               

               Conread position:
               117-436
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 56
               

               Conread position:
               136-572
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 62
               

               Conread position:
               178-519
               

               Cow position:
               
               

               Alignm length:
               345
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 22
               

               Conread position:
               221-437
               

               Cow position:
               
               

               Alignm length:
               222
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 46
               

               Conread position:
               233-447
               

               Cow position:
               
               

               Alignm length:
               217
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               81, 33
               

               Conread position:
               235-376
               

               Cow position:
               
               

               Alignm length:
               143
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               79, 29
               

               Conread position:
               238-437
               

               Cow position:
               
               

               Alignm length:
               201
               

               Alignm identity:
               161
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               76, 27
               

               Conread position:
               247-463
               

               Cow position:
               
               

               Alignm length:
               220
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               38, 18
               

               Conread position:
               250-436
               

               Cow position:
               
               

               Alignm length:
               189
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               65, 15
               

               Conread position:
               253-437
               

               Cow position:
               
               

               Alignm length:
               186
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               60, 26
               

               Conread position:
               287-434
               

               Cow position:
               
               

               Alignm length:
               149
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               27, 91
               

               Conread position:
               298-588
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               205
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               16, 204
               

               Conread position:
               301-588
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               211
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               13, 93
               

               Conread position:
               314-436
               

               Cow position:
               
               

               Alignm length:
               123
               

               Alignm identity:
               104
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               374-576
               

               Cow position:
               
               

               Alignm length:
               203
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               407-578
               

               Cow position:
               
               

               Alignm length:
               174
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               120, 0
               
Show alignments to all cow chromosomes.