Cow genome map
| Conread name: | Ss1.1-rplun0138_i19.5 |
| Conread position: | 1-147 |
| Cow position: | chr19:4252433-4252288 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1-181 |
| Cow position: | chr19:561580-561403 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 1-181 |
| Cow position: | chr19:28376456-28376627 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-203 |
| Cow position: | chr19:32193502-32193704 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 171, 198 |
| Conread position: | 1-206 |
| Cow position: | chr19:4532822-4532625 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 171, 61 |
| Conread position: | 1-214 |
| Cow position: | chr19:27052840-27052632 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1-237 |
| Cow position: | chr19:29209486-29209721 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 137 |
| Conread position: | 1-275 |
| Cow position: | chr19:20125546-20125802 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 223, 62 |
| Conread position: | 1-300 |
| Cow position: | chr19:34345-34640 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 160 |
| Conread position: | 1-323 |
| Cow position: | chr19:359579-359260 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 280, 197 |
| Conread position: | 1-329 |
| Cow position: | chr19:31341631-31341976 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 197 |
| Conread position: | 1-390 |
| Cow position: | chr19:350358-349976 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 176 |
| Conread position: | 1-392 |
| Cow position: | chr19:32244609-32245001 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 197 |
| Conread position: | 1-417 |
| Cow position: | chr19:32665455-32665867 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-423 |
| Cow position: | chr19:28593202-28593611 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 263 |
| Conread position: | 1-427 |
| Cow position: | chr19:37821-38247 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 197 |
| Conread position: | 1-427 |
| Cow position: | chr19:7341993-7342420 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-427 |
| Cow position: | chr19:32212145-32211721 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 184 |
| Conread position: | 1-427 |
| Cow position: | chr19:43143641-43144068 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 198 |
| Conread position: | 1-431 |
| Cow position: | chr19:170815-170392 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 61 |
| Conread position: | 1-437 |
| Cow position: | chr19:416578-417022 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 158 |
| Conread position: | 1-437 |
| Cow position: | chr19:772524-772963 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-437 |
| Cow position: | chr19:39546549-39546973 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 164 |
| Conread position: | 1-455 |
| Cow position: | chr19:15042089-15042538 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 289 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 1-463 |
| Cow position: | chr19:33873352-33873815 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 142 |
| Conread position: | 1-487 |
| Cow position: | chr19:6553538-6554006 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 61 |
| Conread position: | 1-520 |
| Cow position: | chr19:30755103-30755614 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 103 |
| Conread position: | 1-571 |
| Cow position: | chr19:32223514-32222953 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 142 |
| Conread position: | 2-296 |
| Cow position: | chr19:55078672-55078966 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 2-335 |
| Cow position: | chr19:32785685-32785355 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 166, 159 |
| Conread position: | 2-360 |
| Cow position: | chr19:261362-261728 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 58 |
| Conread position: | 2-414 |
| Cow position: | chr19:40887720-40887316 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 81 |
| Conread position: | 2-417 |
| Cow position: | chr19:28581728-28581317 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 60 |
| Conread position: | 2-422 |
| Cow position: | chr19:439717-439310 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 118 |
| Conread position: | 2-431 |
| Cow position: | chr19:203889-204316 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 60 |
| Conread position: | 2-431 |
| Cow position: | chr19:39390443-39390863 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 120 |
| Conread position: | 2-436 |
| Cow position: | chr19:40852504-40852077 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 118 |
| Conread position: | 2-437 |
| Cow position: | chr19:172137-172572 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-456 |
| Cow position: | chr19:76315-75893 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 60 |
| Conread position: | 2-458 |
| Cow position: | chr19:893687-893233 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 196 |
| Conread position: | 2-460 |
| Cow position: | chr19:4385411-4385854 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 34 |
| Conread position: | 2-460 |
| Cow position: | chr19:10672380-10671922 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-463 |
| Cow position: | chr19:33941538-33941999 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 332, 196 |
| Conread position: | 3-312 |
| Cow position: | chr19:30372209-30372510 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 178 |
| Conread position: | 3-520 |
| Cow position: | chr19:15953782-15954278 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 40 |
| Conread position: | 5-362 |
| Cow position: | chr19:42299567-42299209 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 21 |
| Conread position: | 5-505 |
| Cow position: | chr19:42248744-42249234 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 67 |
| Conread position: | 8-463 |
| Cow position: | chr19:7488245-7488701 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 190 |
| Conread position: | 10-292 |
| Cow position: | chr19:543692-543410 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 188 |
| Conread position: | 21-322 |
| Cow position: | chr19:32237735-32237440 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 41 |
| Conread position: | 45-395 |
| Cow position: | chr19:39688500-39688847 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 17 |
| Conread position: | 58-520 |
| Cow position: | chr19:35376779-35377222 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 21 |
| Conread position: | 75-427 |
| Cow position: | chr19:687065-687415 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 23 |
| Conread position: | 75-440 |
| Cow position: | chr19:10517108-10516738 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 195, 69 |
| Conread position: | 93-427 |
| Cow position: | chr19:52151814-52151478 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 105 |
| Conread position: | 94-432 |
| Cow position: | chr19:20104731-20105070 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 28 |
| Conread position: | 101-588 |
| Cow position: | chr19:377871-377402 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 331 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 123, 32 |
| Conread position: | 112-410 |
| Cow position: | chr19:2274338-2274043 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 31 |
| Conread position: | 116-451 |
| Cow position: | chr19:13114417-13114083 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 107, 83 |
| Conread position: | 117-436 |
| Cow position: | chr19:1032118-1032436 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 56 |
| Conread position: | 136-572 |
| Cow position: | chr19:352933-352485 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 62 |
| Conread position: | 178-519 |
| Cow position: | chr19:42649010-42648673 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 22 |
| Conread position: | 221-437 |
| Cow position: | chr19:28376628-28376848 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 46 |
| Conread position: | 233-447 |
| Cow position: | chr19:40817545-40817330 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 81, 33 |
| Conread position: | 235-376 |
| Cow position: | chr19:4532624-4532483 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 79, 29 |
| Conread position: | 238-437 |
| Cow position: | chr19:29209762-29209959 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 161 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 76, 27 |
| Conread position: | 247-463 |
| Cow position: | chr19:5729000-5729218 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 250-436 |
| Cow position: | chr19:439286-439102 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 65, 15 |
| Conread position: | 253-437 |
| Cow position: | chr19:341399-341583 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 60, 26 |
| Conread position: | 287-434 |
| Cow position: | chr19:4532418-4532280 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 91 |
| Conread position: | 298-588 |
| Cow position: | chr19:42907-43194 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 16, 204 |
| Conread position: | 301-588 |
| Cow position: | chr19:27052623-27052348 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 13, 93 |
| Conread position: | 314-436 |
| Cow position: | chr19:5208411-5208533 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 374-576 |
| Cow position: | chr19:137057-136859 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 407-578 |
| Cow position: | chr19:44532444-44532617 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 120, 0 |
Show alignments to all cow chromosomes.