Cow genome map

Conread name: Ss1.1-rplun0138_i19.5

Conread position: 1-154
Cow position: chr20:19192246-19192093 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-215
Cow position: chr20:4799769-4799556 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 164
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 197, 0

Conread position: 1-222
Cow position: chr20:35973527-35973307 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 170, 179

Conread position: 1-311
Cow position: chr20:11679228-11678918 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-410
Cow position: chr20:13782598-13782980 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 263
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 222, 109

Conread position: 1-413
Cow position: chr20:13665319-13664921 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 277
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 223, 119

Conread position: 1-427
Cow position: chr20:822649-823076 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position: chr20:19437840-19438249 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 91

Conread position: 1-436
Cow position: chr20:5560833-5560397 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-437
Cow position: chr20:5484074-5484509 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 61

Conread position: 1-444
Cow position: chr20:8313554-8313114 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 158

Conread position: 1-489
Cow position: chr20:9954101-9953618 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 61

Conread position: 1-560
Cow position: chr20:18315702-18315172 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 12

Conread position: 2-214
Cow position: chr20:10102666-10102465 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 157
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 136, 0

Conread position: 2-260
Cow position: chr20:21393453-21393706 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 34

Conread position: 2-419
Cow position: chr20:15064652-15065066 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 129

Conread position: 2-431
Cow position: chr20:23798765-23799197 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position: chr20:28565713-28565284 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position: chr20:35119457-35119881 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 35

Conread position: 2-451
Cow position: chr20:21914209-21914657 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 197

Conread position: 2-453
Cow position: chr20:27869080-27869529 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position: chr20:5534822-5535283 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 102

Conread position: 2-463
Cow position: chr20:12438878-12438415 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position: chr20:13762785-13763250 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 196

Conread position: 2-463
Cow position: chr20:15291901-15292356 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 34

Conread position: 2-463
Cow position: chr20:23469776-23469320 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position: chr20:25851107-25850646 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 118

Conread position: 2-463
Cow position: chr20:28160665-28161116 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 34

Conread position: 2-463
Cow position: chr20:30684222-30684666 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 34

Conread position: 3-434
Cow position: chr20:15947509-15947064 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 278

Conread position: 3-437
Cow position: chr20:7116585-7116151 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 195

Conread position: 3-467
Cow position: chr20:3270595-3271054 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 18

Conread position: 4-437
Cow position: chr20:3252248-3251816 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 58

Conread position: 8-186
Cow position: chr20:10846189-10846010 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 138, 0

Conread position: 8-436
Cow position: chr20:25960992-25961421 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 190

Conread position: 8-454
Cow position: chr20:15097989-15097544 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-463
Cow position: chr20:8004336-8003880 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-520
Cow position: chr20:22206437-22206937 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 128

Conread position: 21-427
Cow position: chr20:3032966-3033370 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 41

Conread position: 23-456
Cow position: chr20:13680153-13679722 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 103

Conread position: 28-426
Cow position: chr20:24614448-24614843 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 35

Conread position: 64-417
Cow position: chr20:29948444-29948798 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 134

Conread position: 80-437
Cow position: chr20:3684524-3684169 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 118

Conread position: 84-508
Cow position: chr20:20905235-20904823 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 292
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 87, 53

Conread position: 111-390
Cow position: chr20:5233158-5232888 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 195
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 112, 64

Conread position: 131-440
Cow position: chr20:28463486-28463797 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 210
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 22, 124

Conread position: 137-371
Cow position: chr20:10841229-10840994 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 166
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 21, 63

Conread position: 141-456
Cow position: chr20:8993622-8993313 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 217
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 25, 19

Conread position: 185-372
Cow position: chr20:19367523-19367335 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 37, 13

Conread position: 185-520
Cow position: chr20:13434884-13434560 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 236
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 39, 13

Conread position: 224-431
Cow position: chr20:10846011-10845810 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 166
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 89, 12

Conread position: 265-457
Cow position: chr20:21393738-21393934 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 288-505
Cow position: chr20:5465427-5465636 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 151
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 56, 24

Conread position: 306-436
Cow position: chr20:19495170-19495301 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 111
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 9, 0

Show alignments to all cow chromosomes.