Cow genome map
Conread name: | Ss1.1-rplun0138_i19.5 |
Conread position: | 1-154 |
Cow position: | chr20:19192246-19192093 (view UCSC Genome Browser custom track) |
Alignm length: | 154 |
Alignm identity: | 115 |
Alignm E-value: | 4e-27 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 1-215 |
Cow position: | chr20:4799769-4799556 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 164 |
Alignm E-value: | 8.96831e-44 |
Alignm gaps (pig, cow): | 197, 0 |
Conread position: | 1-222 |
Cow position: | chr20:35973527-35973307 (view UCSC Genome Browser custom track) |
Alignm length: | 223 |
Alignm identity: | 158 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 170, 179 |
Conread position: | 1-311 |
Cow position: | chr20:11679228-11678918 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 222, 197 |
Conread position: | 1-410 |
Cow position: | chr20:13782598-13782980 (view UCSC Genome Browser custom track) |
Alignm length: | 412 |
Alignm identity: | 263 |
Alignm E-value: | 8e-23 |
Alignm gaps (pig, cow): | 222, 109 |
Conread position: | 1-413 |
Cow position: | chr20:13665319-13664921 (view UCSC Genome Browser custom track) |
Alignm length: | 417 |
Alignm identity: | 277 |
Alignm E-value: | 5e-38 |
Alignm gaps (pig, cow): | 223, 119 |
Conread position: | 1-427 |
Cow position: | chr20:822649-823076 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 340 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 222, 197 |
Conread position: | 1-427 |
Cow position: | chr20:19437840-19438249 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 222, 91 |
Conread position: | 1-436 |
Cow position: | chr20:5560833-5560397 (view UCSC Genome Browser custom track) |
Alignm length: | 439 |
Alignm identity: | 349 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 222, 197 |
Conread position: | 1-437 |
Cow position: | chr20:5484074-5484509 (view UCSC Genome Browser custom track) |
Alignm length: | 441 |
Alignm identity: | 347 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 218, 61 |
Conread position: | 1-444 |
Cow position: | chr20:8313554-8313114 (view UCSC Genome Browser custom track) |
Alignm length: | 448 |
Alignm identity: | 339 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 223, 158 |
Conread position: | 1-489 |
Cow position: | chr20:9954101-9953618 (view UCSC Genome Browser custom track) |
Alignm length: | 494 |
Alignm identity: | 369 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 223, 61 |
Conread position: | 1-560 |
Cow position: | chr20:18315702-18315172 (view UCSC Genome Browser custom track) |
Alignm length: | 566 |
Alignm identity: | 401 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 12 |
Conread position: | 2-214 |
Cow position: | chr20:10102666-10102465 (view UCSC Genome Browser custom track) |
Alignm length: | 213 |
Alignm identity: | 157 |
Alignm E-value: | 7e-32 |
Alignm gaps (pig, cow): | 136, 0 |
Conread position: | 2-260 |
Cow position: | chr20:21393453-21393706 (view UCSC Genome Browser custom track) |
Alignm length: | 262 |
Alignm identity: | 205 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 140, 34 |
Conread position: | 2-419 |
Cow position: | chr20:15064652-15065066 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 209, 129 |
Conread position: | 2-431 |
Cow position: | chr20:23798765-23799197 (view UCSC Genome Browser custom track) |
Alignm length: | 436 |
Alignm identity: | 328 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 222, 196 |
Conread position: | 2-431 |
Cow position: | chr20:28565713-28565284 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 222, 196 |
Conread position: | 2-431 |
Cow position: | chr20:35119457-35119881 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 127, 35 |
Conread position: | 2-451 |
Cow position: | chr20:21914209-21914657 (view UCSC Genome Browser custom track) |
Alignm length: | 455 |
Alignm identity: | 343 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 150, 197 |
Conread position: | 2-453 |
Cow position: | chr20:27869080-27869529 (view UCSC Genome Browser custom track) |
Alignm length: | 455 |
Alignm identity: | 336 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 222, 196 |
Conread position: | 2-463 |
Cow position: | chr20:5534822-5535283 (view UCSC Genome Browser custom track) |
Alignm length: | 466 |
Alignm identity: | 352 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 102 |
Conread position: | 2-463 |
Cow position: | chr20:12438878-12438415 (view UCSC Genome Browser custom track) |
Alignm length: | 466 |
Alignm identity: | 351 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 222, 196 |
Conread position: | 2-463 |
Cow position: | chr20:13762785-13763250 (view UCSC Genome Browser custom track) |
Alignm length: | 469 |
Alignm identity: | 353 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 214, 196 |
Conread position: | 2-463 |
Cow position: | chr20:15291901-15292356 (view UCSC Genome Browser custom track) |
Alignm length: | 466 |
Alignm identity: | 350 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 222, 34 |
Conread position: | 2-463 |
Cow position: | chr20:23469776-23469320 (view UCSC Genome Browser custom track) |
Alignm length: | 465 |
Alignm identity: | 343 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 222, 196 |
Conread position: | 2-463 |
Cow position: | chr20:25851107-25850646 (view UCSC Genome Browser custom track) |
Alignm length: | 465 |
Alignm identity: | 340 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 222, 118 |
Conread position: | 2-463 |
Cow position: | chr20:28160665-28161116 (view UCSC Genome Browser custom track) |
Alignm length: | 465 |
Alignm identity: | 342 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 222, 34 |
Conread position: | 2-463 |
Cow position: | chr20:30684222-30684666 (view UCSC Genome Browser custom track) |
Alignm length: | 465 |
Alignm identity: | 333 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 222, 34 |
Conread position: | 3-434 |
Cow position: | chr20:15947509-15947064 (view UCSC Genome Browser custom track) |
Alignm length: | 448 |
Alignm identity: | 340 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 210, 278 |
Conread position: | 3-437 |
Cow position: | chr20:7116585-7116151 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 328 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 221, 195 |
Conread position: | 3-467 |
Cow position: | chr20:3270595-3271054 (view UCSC Genome Browser custom track) |
Alignm length: | 472 |
Alignm identity: | 367 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 147, 18 |
Conread position: | 4-437 |
Cow position: | chr20:3252248-3251816 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 112, 58 |
Conread position: | 8-186 |
Cow position: | chr20:10846189-10846010 (view UCSC Genome Browser custom track) |
Alignm length: | 180 |
Alignm identity: | 130 |
Alignm E-value: | 5e-28 |
Alignm gaps (pig, cow): | 138, 0 |
Conread position: | 8-436 |
Cow position: | chr20:25960992-25961421 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 215, 190 |
Conread position: | 8-454 |
Cow position: | chr20:15097989-15097544 (view UCSC Genome Browser custom track) |
Alignm length: | 451 |
Alignm identity: | 335 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 190 |
Conread position: | 8-463 |
Cow position: | chr20:8004336-8003880 (view UCSC Genome Browser custom track) |
Alignm length: | 460 |
Alignm identity: | 344 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 190 |
Conread position: | 8-520 |
Cow position: | chr20:22206437-22206937 (view UCSC Genome Browser custom track) |
Alignm length: | 519 |
Alignm identity: | 342 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 267, 128 |
Conread position: | 21-427 |
Cow position: | chr20:3032966-3033370 (view UCSC Genome Browser custom track) |
Alignm length: | 410 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 203, 41 |
Conread position: | 23-456 |
Cow position: | chr20:13680153-13679722 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 103 |
Conread position: | 28-426 |
Cow position: | chr20:24614448-24614843 (view UCSC Genome Browser custom track) |
Alignm length: | 403 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 196, 35 |
Conread position: | 64-417 |
Cow position: | chr20:29948444-29948798 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 160, 134 |
Conread position: | 80-437 |
Cow position: | chr20:3684524-3684169 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 144, 118 |
Conread position: | 84-508 |
Cow position: | chr20:20905235-20904823 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 292 |
Alignm E-value: | 5e-39 |
Alignm gaps (pig, cow): | 87, 53 |
Conread position: | 111-390 |
Cow position: | chr20:5233158-5232888 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 195 |
Alignm E-value: | 8e-23 |
Alignm gaps (pig, cow): | 112, 64 |
Conread position: | 131-440 |
Cow position: | chr20:28463486-28463797 (view UCSC Genome Browser custom track) |
Alignm length: | 319 |
Alignm identity: | 210 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 22, 124 |
Conread position: | 137-371 |
Cow position: | chr20:10841229-10840994 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 166 |
Alignm E-value: | 4e-26 |
Alignm gaps (pig, cow): | 21, 63 |
Conread position: | 141-456 |
Cow position: | chr20:8993622-8993313 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 217 |
Alignm E-value: | 8e-33 |
Alignm gaps (pig, cow): | 25, 19 |
Conread position: | 185-372 |
Cow position: | chr20:19367523-19367335 (view UCSC Genome Browser custom track) |
Alignm length: | 191 |
Alignm identity: | 139 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 37, 13 |
Conread position: | 185-520 |
Cow position: | chr20:13434884-13434560 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 236 |
Alignm E-value: | 5e-39 |
Alignm gaps (pig, cow): | 39, 13 |
Conread position: | 224-431 |
Cow position: | chr20:10846011-10845810 (view UCSC Genome Browser custom track) |
Alignm length: | 209 |
Alignm identity: | 166 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 89, 12 |
Conread position: | 265-457 |
Cow position: | chr20:21393738-21393934 (view UCSC Genome Browser custom track) |
Alignm length: | 197 |
Alignm identity: | 141 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 17, 0 |
Conread position: | 288-505 |
Cow position: | chr20:5465427-5465636 (view UCSC Genome Browser custom track) |
Alignm length: | 219 |
Alignm identity: | 151 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 56, 24 |
Conread position: | 306-436 |
Cow position: | chr20:19495170-19495301 (view UCSC Genome Browser custom track) |
Alignm length: | 132 |
Alignm identity: | 111 |
Alignm E-value: | 8e-33 |
Alignm gaps (pig, cow): | 9, 0 |
Show alignments to all cow chromosomes.