Cow genome map

Conread name: Ss1.1-rplun0138_i19.5

Conread position: 1-132
Cow position:
Alignm length: 132
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-235
Cow position:
Alignm length: 237
Alignm identity: 175
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 222, 197

Conread position: 1-240
Cow position:
Alignm length: 243
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 197

Conread position: 1-275
Cow position:
Alignm length: 278
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 61

Conread position: 1-276
Cow position:
Alignm length: 279
Alignm identity: 208
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 101, 61

Conread position: 1-334
Cow position:
Alignm length: 338
Alignm identity: 235
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 223, 61

Conread position: 1-359
Cow position:
Alignm length: 362
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-382
Cow position:
Alignm length: 387
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 158

Conread position: 1-422
Cow position:
Alignm length: 425
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 36

Conread position: 1-422
Cow position:
Alignm length: 425
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 162

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 439
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 106

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 58

Conread position: 1-427
Cow position:
Alignm length: 431
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 166

Conread position: 1-431
Cow position:
Alignm length: 435
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 62

Conread position: 1-432
Cow position:
Alignm length: 436
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 137

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 61

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 73

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 61

Conread position: 1-436
Cow position:
Alignm length: 441
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 197

Conread position: 1-436
Cow position:
Alignm length: 440
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 198

Conread position: 1-437
Cow position:
Alignm length: 441
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 22

Conread position: 1-437
Cow position:
Alignm length: 440
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 96

Conread position: 1-437
Cow position:
Alignm length: 440
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-456
Cow position:
Alignm length: 459
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-458
Cow position:
Alignm length: 463
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 81

Conread position: 1-578
Cow position:
Alignm length: 583
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 196

Conread position: 1-588
Cow position:
Alignm length: 612
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 35

Conread position: 2-201
Cow position:
Alignm length: 201
Alignm identity: 150
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 143, 197

Conread position: 2-297
Cow position:
Alignm length: 299
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 142

Conread position: 2-392
Cow position:
Alignm length: 393
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 196

Conread position: 2-410
Cow position:
Alignm length: 412
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-423
Cow position:
Alignm length: 436
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 30

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 76

Conread position: 2-437
Cow position:
Alignm length: 443
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 200

Conread position: 2-447
Cow position:
Alignm length: 451
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 60

Conread position: 2-460
Cow position:
Alignm length: 462
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 26

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 196

Conread position: 2-463
Cow position:
Alignm length: 467
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 124

Conread position: 2-463
Cow position:
Alignm length: 465
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 147

Conread position: 2-560
Cow position:
Alignm length: 562
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 198

Conread position: 3-463
Cow position:
Alignm length: 465
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 84

Conread position: 3-504
Cow position:
Alignm length: 508
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 66

Conread position: 5-578
Cow position:
Alignm length: 598
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 46

Conread position: 8-167
Cow position:
Alignm length: 160
Alignm identity: 118
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 154, 0

Conread position: 8-263
Cow position:
Alignm length: 258
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 190

Conread position: 8-311
Cow position:
Alignm length: 311
Alignm identity: 207
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 156, 80

Conread position: 8-403
Cow position:
Alignm length: 399
Alignm identity: 269
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 108, 23

Conread position: 8-437
Cow position:
Alignm length: 433
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 54

Conread position: 8-437
Cow position:
Alignm length: 433
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 117

Conread position: 8-441
Cow position:
Alignm length: 437
Alignm identity: 285
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 163, 52

Conread position: 8-463
Cow position:
Alignm length: 460
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 185

Conread position: 8-463
Cow position:
Alignm length: 459
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 190

Conread position: 8-516
Cow position:
Alignm length: 516
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 190

Conread position: 9-432
Cow position:
Alignm length: 447
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 42

Conread position: 9-578
Cow position:
Alignm length: 577
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 150

Conread position: 10-431
Cow position:
Alignm length: 433
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 255

Conread position: 37-386
Cow position:
Alignm length: 356
Alignm identity: 232
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 64, 8

Conread position: 44-362
Cow position:
Alignm length: 332
Alignm identity: 217
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 28, 53

Conread position: 49-437
Cow position:
Alignm length: 393
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 149

Conread position: 50-427
Cow position:
Alignm length: 382
Alignm identity: 248
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 60, 71

Conread position: 51-435
Cow position:
Alignm length: 389
Alignm identity: 255
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 173, 69

Conread position: 53-305
Cow position:
Alignm length: 256
Alignm identity: 176
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 125, 13

Conread position: 69-372
Cow position:
Alignm length: 310
Alignm identity: 202
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 27, 16

Conread position: 86-377
Cow position:
Alignm length: 297
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 114

Conread position: 101-437
Cow position:
Alignm length: 340
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 97

Conread position: 104-457
Cow position:
Alignm length: 359
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 21

Conread position: 105-495
Cow position:
Alignm length: 398
Alignm identity: 255
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 73, 61

Conread position: 116-528
Cow position:
Alignm length: 421
Alignm identity: 261
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 16, 7

Conread position: 125-457
Cow position:
Alignm length: 342
Alignm identity: 239
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 99, 31

Conread position: 127-463
Cow position:
Alignm length: 342
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 8

Conread position: 129-368
Cow position:
Alignm length: 247
Alignm identity: 169
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 7, 63

Conread position: 137-458
Cow position:
Alignm length: 327
Alignm identity: 220
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 39, 15

Conread position: 176-436
Cow position:
Alignm length: 264
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 22

Conread position: 201-463
Cow position:
Alignm length: 266
Alignm identity: 190
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 23, 66

Conread position: 223-460
Cow position:
Alignm length: 240
Alignm identity: 167
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 91, 37

Conread position: 237-588
Cow position:
Alignm length: 353
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 23

Conread position: 256-432
Cow position:
Alignm length: 178
Alignm identity: 148
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 58, 9

Conread position: 265-416
Cow position:
Alignm length: 154
Alignm identity: 117
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 50, 67

Conread position: 265-431
Cow position:
Alignm length: 169
Alignm identity: 137
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 49, 165

Conread position: 276-588
Cow position:
Alignm length: 314
Alignm identity: 216
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 40, 179

Conread position: 293-449
Cow position:
Alignm length: 158
Alignm identity: 129
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 21, 0

Conread position: 335-578
Cow position:
Alignm length: 244
Alignm identity: 167
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 130, 0

Show alignments to all cow chromosomes.