Cow genome map
| Conread name: | Ss1.1-rplun0138_i19.5 |
| Conread position: | 1-132 |
| Cow position: | chr21:17572922-17573053 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-235 |
| Cow position: | chr21:26819020-26818785 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-240 |
| Cow position: | chr21:3615293-3615534 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 197 |
| Conread position: | 1-275 |
| Cow position: | chr21:2716680-2716406 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 61 |
| Conread position: | 1-276 |
| Cow position: | chr21:34259218-34258955 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 208 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 101, 61 |
| Conread position: | 1-334 |
| Cow position: | chr21:33755309-33755636 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 235 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 223, 61 |
| Conread position: | 1-359 |
| Cow position: | chr21:4222686-4222333 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-382 |
| Cow position: | chr21:3426486-3426868 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 158 |
| Conread position: | 1-422 |
| Cow position: | chr21:20744750-20744346 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 36 |
| Conread position: | 1-422 |
| Cow position: | chr21:37044914-37045333 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 162 |
| Conread position: | 1-427 |
| Cow position: | chr21:6339567-6339994 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-427 |
| Cow position: | chr21:11505588-11506024 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-427 |
| Cow position: | chr21:12055999-12055573 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 106 |
| Conread position: | 1-427 |
| Cow position: | chr21:26638462-26638037 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 58 |
| Conread position: | 1-427 |
| Cow position: | chr21:39425064-39425491 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 166 |
| Conread position: | 1-431 |
| Cow position: | chr21:34293019-34293446 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 62 |
| Conread position: | 1-432 |
| Cow position: | chr21:2788990-2788561 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 137 |
| Conread position: | 1-436 |
| Cow position: | chr21:2476509-2476104 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 61 |
| Conread position: | 1-436 |
| Cow position: | chr21:2510653-2511088 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 73 |
| Conread position: | 1-436 |
| Cow position: | chr21:4090652-4091086 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 61 |
| Conread position: | 1-436 |
| Cow position: | chr21:11453655-11453217 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 197 |
| Conread position: | 1-436 |
| Cow position: | chr21:46915588-46916025 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 198 |
| Conread position: | 1-437 |
| Cow position: | chr21:2530125-2529690 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 22 |
| Conread position: | 1-437 |
| Cow position: | chr21:13123998-13123568 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 96 |
| Conread position: | 1-437 |
| Cow position: | chr21:35596369-35596804 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-456 |
| Cow position: | chr21:8678359-8677903 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-458 |
| Cow position: | chr21:4076846-4077298 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 81 |
| Conread position: | 1-578 |
| Cow position: | chr21:23811877-23812453 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 196 |
| Conread position: | 1-588 |
| Cow position: | chr21:9891604-9892196 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 35 |
| Conread position: | 2-201 |
| Cow position: | chr21:27708764-27708963 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 143, 197 |
| Conread position: | 2-297 |
| Cow position: | chr21:2769459-2769164 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 142 |
| Conread position: | 2-392 |
| Cow position: | chr21:47948111-47948501 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 196 |
| Conread position: | 2-410 |
| Cow position: | chr21:10850082-10850490 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-423 |
| Cow position: | chr21:7267539-7267113 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 30 |
| Conread position: | 2-431 |
| Cow position: | chr21:2416238-2416649 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 76 |
| Conread position: | 2-437 |
| Cow position: | chr21:145921-146360 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 200 |
| Conread position: | 2-447 |
| Cow position: | chr21:4589988-4589542 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 60 |
| Conread position: | 2-460 |
| Cow position: | chr21:3778769-3779227 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 26 |
| Conread position: | 2-463 |
| Cow position: | chr21:2883746-2883284 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 196 |
| Conread position: | 2-463 |
| Cow position: | chr21:31559652-31559191 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 124 |
| Conread position: | 2-463 |
| Cow position: | chr21:48116110-48116565 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 147 |
| Conread position: | 2-560 |
| Cow position: | chr21:4183526-4184067 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 198 |
| Conread position: | 3-463 |
| Cow position: | chr21:10566677-10567133 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 84 |
| Conread position: | 3-504 |
| Cow position: | chr21:36714635-36715131 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 66 |
| Conread position: | 5-578 |
| Cow position: | chr21:359022-359611 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 46 |
| Conread position: | 8-167 |
| Cow position: | chr21:1191056-1191214 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 8-263 |
| Cow position: | chr21:33251400-33251656 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 190 |
| Conread position: | 8-311 |
| Cow position: | chr21:37147526-37147820 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 156, 80 |
| Conread position: | 8-403 |
| Cow position: | chr21:216317-216693 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 108, 23 |
| Conread position: | 8-437 |
| Cow position: | chr21:1292169-1291753 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 54 |
| Conread position: | 8-437 |
| Cow position: | chr21:4456835-4457264 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 117 |
| Conread position: | 8-441 |
| Cow position: | chr21:3194404-3194819 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 163, 52 |
| Conread position: | 8-463 |
| Cow position: | chr21:30561810-30562267 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 185 |
| Conread position: | 8-463 |
| Cow position: | chr21:30599912-30599461 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 190 |
| Conread position: | 8-516 |
| Cow position: | chr21:21914293-21914803 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 190 |
| Conread position: | 9-432 |
| Cow position: | chr21:2674618-2674180 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 42 |
| Conread position: | 9-578 |
| Cow position: | chr21:2541404-2540834 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 150 |
| Conread position: | 10-431 |
| Cow position: | chr21:27282397-27282816 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 255 |
| Conread position: | 37-386 |
| Cow position: | chr21:21926663-21926324 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 64, 8 |
| Conread position: | 44-362 |
| Cow position: | chr21:32516932-32517257 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 28, 53 |
| Conread position: | 49-437 |
| Cow position: | chr21:40271628-40271238 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 149 |
| Conread position: | 50-427 |
| Cow position: | chr21:10762456-10762813 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 60, 71 |
| Conread position: | 51-435 |
| Cow position: | chr21:6699515-6699147 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 255 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 173, 69 |
| Conread position: | 53-305 |
| Cow position: | chr21:18692776-18693017 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 125, 13 |
| Conread position: | 69-372 |
| Cow position: | chr21:36824765-36825067 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 27, 16 |
| Conread position: | 86-377 |
| Cow position: | chr21:47939560-47939849 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 114 |
| Conread position: | 101-437 |
| Cow position: | chr21:3798270-3797933 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 97 |
| Conread position: | 104-457 |
| Cow position: | chr21:18820312-18819970 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 21 |
| Conread position: | 105-495 |
| Cow position: | chr21:21259055-21259433 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 73, 61 |
| Conread position: | 116-528 |
| Cow position: | chr21:19650920-19651327 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 261 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 16, 7 |
| Conread position: | 125-457 |
| Cow position: | chr21:2502019-2502350 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 99, 31 |
| Conread position: | 127-463 |
| Cow position: | chr21:1191291-1191628 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 8 |
| Conread position: | 129-368 |
| Cow position: | chr21:4982416-4982658 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 7, 63 |
| Conread position: | 137-458 |
| Cow position: | chr21:4086939-4087261 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 176-436 |
| Cow position: | chr21:26650217-26650478 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 22 |
| Conread position: | 201-463 |
| Cow position: | chr21:35143968-35144221 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 23, 66 |
| Conread position: | 223-460 |
| Cow position: | chr21:23601418-23601649 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 91, 37 |
| Conread position: | 237-588 |
| Cow position: | chr21:30226257-30226597 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 23 |
| Conread position: | 256-432 |
| Cow position: | chr21:3615569-3615743 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 148 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 58, 9 |
| Conread position: | 265-416 |
| Cow position: | chr21:33251771-33251923 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 50, 67 |
| Conread position: | 265-431 |
| Cow position: | chr21:34258725-34258558 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 49, 165 |
| Conread position: | 276-588 |
| Cow position: | chr21:9870022-9870324 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 40, 179 |
| Conread position: | 293-449 |
| Cow position: | chr21:2716425-2716268 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 335-578 |
| Cow position: | chr21:29105-29347 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 130, 0 |
Show alignments to all cow chromosomes.