Cow genome map
| Conread name: | Ss1.1-rplun0138_i19.5 |
| Conread position: | 1-140 |
| Cow position: | chr23:8980664-8980525 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-319 |
| Cow position: | chr23:2340233-2340541 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 234 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 223, 13 |
| Conread position: | 1-372 |
| Cow position: | chr23:1025231-1024864 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 22 |
| Conread position: | 1-395 |
| Cow position: | chr23:2524367-2523974 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 61 |
| Conread position: | 1-427 |
| Cow position: | chr23:2313409-2312985 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 184 |
| Conread position: | 1-427 |
| Cow position: | chr23:4359658-4360085 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-427 |
| Cow position: | chr23:28217119-28217545 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 160 |
| Conread position: | 1-431 |
| Cow position: | chr23:19950755-19950324 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 178 |
| Conread position: | 1-436 |
| Cow position: | chr23:31446643-31447079 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-437 |
| Cow position: | chr23:988812-988383 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 140 |
| Conread position: | 1-437 |
| Cow position: | chr23:4276783-4277220 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 187 |
| Conread position: | 1-450 |
| Cow position: | chr23:25684230-25683786 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 30 |
| Conread position: | 1-457 |
| Cow position: | chr23:5779256-5778803 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 61 |
| Conread position: | 1-457 |
| Cow position: | chr23:20302043-20302495 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 184 |
| Conread position: | 1-459 |
| Cow position: | chr23:4751842-4752275 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 309 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 310, 134 |
| Conread position: | 1-470 |
| Cow position: | chr23:22945233-22944784 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 291 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 316, 88 |
| Conread position: | 1-508 |
| Cow position: | chr23:19332570-19332077 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 80 |
| Conread position: | 1-520 |
| Cow position: | chr23:38578120-38578623 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 27 |
| Conread position: | 2-350 |
| Cow position: | chr23:4815902-4816253 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 266 |
| Conread position: | 2-377 |
| Cow position: | chr23:3013474-3013851 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 197 |
| Conread position: | 2-415 |
| Cow position: | chr23:20156404-20155972 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 212 |
| Conread position: | 2-427 |
| Cow position: | chr23:15176904-15177326 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-431 |
| Cow position: | chr23:967517-967092 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 197 |
| Conread position: | 2-431 |
| Cow position: | chr23:2027289-2026861 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 141 |
| Conread position: | 2-431 |
| Cow position: | chr23:4509930-4510335 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 60 |
| Conread position: | 2-431 |
| Cow position: | chr23:4888510-4888931 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 120 |
| Conread position: | 2-431 |
| Cow position: | chr23:30636472-30636043 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-437 |
| Cow position: | chr23:7273485-7273896 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 14 |
| Conread position: | 2-437 |
| Cow position: | chr23:15220068-15219626 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 153 |
| Conread position: | 2-437 |
| Cow position: | chr23:22147428-22146989 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 203 |
| Conread position: | 2-438 |
| Cow position: | chr23:36031542-36031106 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 60 |
| Conread position: | 2-457 |
| Cow position: | chr23:14974733-14974277 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 197 |
| Conread position: | 2-457 |
| Cow position: | chr23:16617019-16616559 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 72 |
| Conread position: | 2-459 |
| Cow position: | chr23:19489367-19489830 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 200 |
| Conread position: | 2-460 |
| Cow position: | chr23:6216404-6216860 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 165 |
| Conread position: | 2-463 |
| Cow position: | chr23:3881869-3881413 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 138 |
| Conread position: | 2-463 |
| Cow position: | chr23:4640795-4640332 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 2-463 |
| Cow position: | chr23:14965917-14965460 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 164 |
| Conread position: | 2-463 |
| Cow position: | chr23:27399333-27399795 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 42 |
| Conread position: | 2-463 |
| Cow position: | chr23:28913242-28913685 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 61 |
| Conread position: | 3-391 |
| Cow position: | chr23:5874944-5874563 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 190 |
| Conread position: | 8-397 |
| Cow position: | chr23:34175019-34175402 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 208, 46 |
| Conread position: | 8-457 |
| Cow position: | chr23:2795726-2795281 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 28 |
| Conread position: | 8-488 |
| Cow position: | chr23:15525446-15525916 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 29 |
| Conread position: | 14-431 |
| Cow position: | chr23:4434306-4434714 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 48 |
| Conread position: | 36-447 |
| Cow position: | chr23:31591945-31591526 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 63 |
| Conread position: | 44-460 |
| Cow position: | chr23:17185004-17185418 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 278 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 178, 81 |
| Conread position: | 50-578 |
| Cow position: | chr23:29474676-29474154 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 54 |
| Conread position: | 63-525 |
| Cow position: | chr23:1327570-1327121 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 136 |
| Conread position: | 68-431 |
| Cow position: | chr23:2757489-2757852 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 130 |
| Conread position: | 70-457 |
| Cow position: | chr23:2763865-2763491 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 253 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 6, 129 |
| Conread position: | 75-435 |
| Cow position: | chr23:10903434-10903800 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 149, 36 |
| Conread position: | 77-463 |
| Cow position: | chr23:11778376-11778780 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 121 |
| Conread position: | 92-488 |
| Cow position: | chr23:2716309-2716696 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 106 |
| Conread position: | 94-497 |
| Cow position: | chr23:36211207-36210797 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 82, 106 |
| Conread position: | 118-412 |
| Cow position: | chr23:31595292-31594996 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 81 |
| Conread position: | 118-437 |
| Cow position: | chr23:2574481-2574800 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 80 |
| Conread position: | 139-450 |
| Cow position: | chr23:26836249-26836553 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 83, 27 |
| Conread position: | 166-437 |
| Cow position: | chr23:8980317-8980056 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 206 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 149, 32 |
| Conread position: | 186-395 |
| Cow position: | chr23:2782419-2782213 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 42, 80 |
| Conread position: | 200-522 |
| Cow position: | chr23:16615970-16615649 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 67 |
| Conread position: | 223-432 |
| Cow position: | chr23:2765402-2765194 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 42 |
| Conread position: | 225-525 |
| Cow position: | chr23:22875620-22875333 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 219 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 89, 40 |
| Conread position: | 234-437 |
| Cow position: | chr23:29452258-29452053 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 31 |
| Conread position: | 308-578 |
| Cow position: | chr23:1402745-1402481 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 23, 8 |
Show alignments to all cow chromosomes.