Cow genome map
| Conread name: | Ss1.1-rplun0138_i19.5 |
| Conread position: | 1-123 |
| Cow position: | chr24:13021582-13021704 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-186 |
| Cow position: | chr24:12288812-12288630 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-192 |
| Cow position: | chr24:13531622-13531431 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 150 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-243 |
| Cow position: | chr24:6645329-6645570 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 222, 61 |
| Conread position: | 1-245 |
| Cow position: | chr24:2636034-2636276 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 187 |
| Conread position: | 1-250 |
| Cow position: | chr24:7061016-7061264 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 58 |
| Conread position: | 1-256 |
| Cow position: | chr24:17187460-17187710 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 91, 47 |
| Conread position: | 1-305 |
| Cow position: | chr24:39678344-39678627 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 14, 62 |
| Conread position: | 1-333 |
| Cow position: | chr24:12131570-12131239 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 59 |
| Conread position: | 1-398 |
| Cow position: | chr24:14885326-14884942 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 224, 39 |
| Conread position: | 1-407 |
| Cow position: | chr24:44017460-44017867 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-409 |
| Cow position: | chr24:15392395-15392017 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 142 |
| Conread position: | 1-423 |
| Cow position: | chr24:9188817-9188395 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-427 |
| Cow position: | chr24:6025181-6024757 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-427 |
| Cow position: | chr24:13188099-13188514 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-427 |
| Cow position: | chr24:16084746-16084318 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 198 |
| Conread position: | 1-427 |
| Cow position: | chr24:22793088-22793513 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 97 |
| Conread position: | 1-427 |
| Cow position: | chr24:33739430-33738999 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 194 |
| Conread position: | 1-431 |
| Cow position: | chr24:6083931-6084362 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-436 |
| Cow position: | chr24:6434155-6434590 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-436 |
| Cow position: | chr24:8030065-8030501 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-436 |
| Cow position: | chr24:12485403-12484965 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-436 |
| Cow position: | chr24:40548791-40549224 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 166 |
| Conread position: | 1-437 |
| Cow position: | chr24:35838711-35838269 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 206 |
| Conread position: | 1-454 |
| Cow position: | chr24:12236968-12237419 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 197 |
| Conread position: | 1-456 |
| Cow position: | chr24:14585008-14585444 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 43 |
| Conread position: | 1-459 |
| Cow position: | chr24:6515131-6514682 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 163, 122 |
| Conread position: | 1-462 |
| Cow position: | chr24:35841698-35841245 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 27 |
| Conread position: | 1-581 |
| Cow position: | chr24:36560169-36559602 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 158 |
| Conread position: | 1-588 |
| Cow position: | chr24:12797850-12797271 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 88 |
| Conread position: | 2-282 |
| Cow position: | chr24:14390810-14390540 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 207 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 222, 23 |
| Conread position: | 2-431 |
| Cow position: | chr24:19833296-19833729 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 196 |
| Conread position: | 2-433 |
| Cow position: | chr24:6335614-6336029 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 29 |
| Conread position: | 2-437 |
| Cow position: | chr24:6145275-6145719 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 205 |
| Conread position: | 2-437 |
| Cow position: | chr24:12086113-12086549 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 160 |
| Conread position: | 2-437 |
| Cow position: | chr24:12161794-12162206 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 141 |
| Conread position: | 2-438 |
| Cow position: | chr24:12114124-12113696 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 57 |
| Conread position: | 2-447 |
| Cow position: | chr24:37216919-37217359 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 197 |
| Conread position: | 2-463 |
| Cow position: | chr24:148699-148241 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 30 |
| Conread position: | 2-520 |
| Cow position: | chr24:12568165-12568662 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 345 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 176, 35 |
| Conread position: | 2-576 |
| Cow position: | chr24:16649385-16648832 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 131 |
| Conread position: | 3-215 |
| Cow position: | chr24:35987428-35987230 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 3-463 |
| Cow position: | chr24:4415609-4415153 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 137 |
| Conread position: | 3-520 |
| Cow position: | chr24:1447476-1447989 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 60 |
| Conread position: | 8-377 |
| Cow position: | chr24:22952057-22952427 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 190 |
| Conread position: | 8-437 |
| Cow position: | chr24:14384692-14384264 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 170 |
| Conread position: | 8-437 |
| Cow position: | chr24:33933287-33933717 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 190 |
| Conread position: | 8-457 |
| Cow position: | chr24:9092352-9091914 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 163 |
| Conread position: | 8-527 |
| Cow position: | chr24:36707772-36708280 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 36 |
| Conread position: | 9-455 |
| Cow position: | chr24:40654314-40654752 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 31 |
| Conread position: | 10-460 |
| Cow position: | chr24:14873418-14872979 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 35 |
| Conread position: | 11-304 |
| Cow position: | chr24:12224545-12224245 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 263 |
| Conread position: | 12-410 |
| Cow position: | chr24:32331250-32331639 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 276, 186 |
| Conread position: | 30-457 |
| Cow position: | chr24:6660665-6660227 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 167 |
| Conread position: | 49-302 |
| Cow position: | chr24:38635717-38635969 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 187 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 179, 101 |
| Conread position: | 50-500 |
| Cow position: | chr24:37321638-37321204 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 295 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 26, 44 |
| Conread position: | 57-494 |
| Cow position: | chr24:17303634-17303210 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 167, 51 |
| Conread position: | 59-458 |
| Cow position: | chr24:16141050-16141440 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 157, 138 |
| Conread position: | 63-520 |
| Cow position: | chr24:6537522-6537964 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 61 |
| Conread position: | 78-423 |
| Cow position: | chr24:17696976-17696641 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 13 |
| Conread position: | 85-410 |
| Cow position: | chr24:4464270-4463944 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 46, 82 |
| Conread position: | 93-377 |
| Cow position: | chr24:13524126-13524395 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 133, 59 |
| Conread position: | 107-463 |
| Cow position: | chr24:12335754-12335397 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 91 |
| Conread position: | 118-520 |
| Cow position: | chr24:7091564-7091166 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 275 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 106, 79 |
| Conread position: | 135-463 |
| Cow position: | chr24:29187331-29187661 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 63 |
| Conread position: | 152-415 |
| Cow position: | chr24:1438118-1437859 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 72, 24 |
| Conread position: | 157-501 |
| Cow position: | chr24:12288324-12287982 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 67, 21 |
| Conread position: | 217-505 |
| Cow position: | chr24:8152874-8152587 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 61, 53 |
| Conread position: | 231-413 |
| Cow position: | chr24:6645848-6646030 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 153 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 55, 34 |
| Conread position: | 236-423 |
| Cow position: | chr24:7061539-7061726 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 157 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 29 |
| Conread position: | 244-427 |
| Cow position: | chr24:5993071-5992888 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 71, 21 |
| Conread position: | 270-504 |
| Cow position: | chr24:16376708-16376934 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 44, 39 |
| Conread position: | 281-525 |
| Cow position: | chr24:14333237-14333481 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 32, 192 |
| Conread position: | 292-522 |
| Cow position: | chr24:38636810-38637041 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 306-427 |
| Cow position: | chr24:43813983-43814105 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 308-516 |
| Cow position: | chr24:13302762-13302557 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 124, 7 |
| Conread position: | 321-431 |
| Cow position: | chr24:6444517-6444626 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 88 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
Show alignments to all cow chromosomes.