Cow genome map
| Conread name: | Ss1.1-rplun0138_i19.5 |
| Conread position: | 1-136 |
| Cow position: | chr25:18411416-18411283 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 39, 62 |
| Conread position: | 1-157 |
| Cow position: | chr25:18302661-18302817 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-383 |
| Cow position: | chr25:18027755-18027372 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 197 |
| Conread position: | 1-427 |
| Cow position: | chr25:17589677-17589257 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 22 |
| Conread position: | 1-427 |
| Cow position: | chr25:19916954-19917381 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-427 |
| Cow position: | chr25:26922099-26922513 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 197 |
| Conread position: | 1-436 |
| Cow position: | chr25:35362552-35362123 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 146 |
| Conread position: | 1-437 |
| Cow position: | chr25:11375477-11375042 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 179 |
| Conread position: | 1-437 |
| Cow position: | chr25:14016043-14016472 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 61 |
| Conread position: | 1-437 |
| Cow position: | chr25:17468825-17468395 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 160 |
| Conread position: | 1-437 |
| Cow position: | chr25:34656574-34656139 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 147 |
| Conread position: | 1-452 |
| Cow position: | chr25:32579838-32580286 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 18 |
| Conread position: | 1-461 |
| Cow position: | chr25:36240417-36240881 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 201 |
| Conread position: | 1-508 |
| Cow position: | chr25:12759726-12759222 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 118 |
| Conread position: | 1-520 |
| Cow position: | chr25:11933654-11933140 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 27 |
| Conread position: | 1-520 |
| Cow position: | chr25:18255492-18254979 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 61 |
| Conread position: | 1-525 |
| Cow position: | chr25:18092890-18093404 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 23 |
| Conread position: | 2-181 |
| Cow position: | chr25:34347120-34346940 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 2-398 |
| Cow position: | chr25:20629449-20629834 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 196 |
| Conread position: | 2-426 |
| Cow position: | chr25:13780903-13781326 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 60 |
| Conread position: | 2-441 |
| Cow position: | chr25:18275952-18275517 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 111 |
| Conread position: | 2-451 |
| Cow position: | chr25:8674787-8675235 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-463 |
| Cow position: | chr25:12942829-12942366 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 191 |
| Conread position: | 2-463 |
| Cow position: | chr25:18890143-18889681 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-463 |
| Cow position: | chr25:22147366-22147829 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-463 |
| Cow position: | chr25:25506522-25506983 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 195 |
| Conread position: | 3-437 |
| Cow position: | chr25:18060713-18060295 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 8-190 |
| Cow position: | chr25:26867103-26867272 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 8-427 |
| Cow position: | chr25:20777019-20776605 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 35 |
| Conread position: | 9-259 |
| Cow position: | chr25:17560733-17560476 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 183, 113 |
| Conread position: | 10-214 |
| Cow position: | chr25:18173242-18173446 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-288 |
| Cow position: | chr25:33991177-33990902 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 74 |
| Conread position: | 14-463 |
| Cow position: | chr25:26279149-26279593 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 172 |
| Conread position: | 21-520 |
| Cow position: | chr25:23345449-23344961 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 25 |
| Conread position: | 32-453 |
| Cow position: | chr25:33665967-33665552 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 96 |
| Conread position: | 44-335 |
| Cow position: | chr25:39560372-39560093 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 172, 93 |
| Conread position: | 44-428 |
| Cow position: | chr25:18645928-18645543 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 52, 22 |
| Conread position: | 49-295 |
| Cow position: | chr25:4761077-4760834 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 140, 40 |
| Conread position: | 63-423 |
| Cow position: | chr25:27022634-27022273 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 135 |
| Conread position: | 85-410 |
| Cow position: | chr25:18421623-18421950 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 139, 99 |
| Conread position: | 92-427 |
| Cow position: | chr25:18195138-18194801 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 107 |
| Conread position: | 142-520 |
| Cow position: | chr25:33243841-33244198 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 261 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 178, 57 |
| Conread position: | 161-437 |
| Cow position: | chr25:18303431-18303707 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 37 |
| Conread position: | 165-437 |
| Cow position: | chr25:9544099-9544368 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 33 |
| Conread position: | 166-463 |
| Cow position: | chr25:34346985-34346683 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 177-431 |
| Cow position: | chr25:34014443-34014188 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 23, 92 |
| Conread position: | 204-505 |
| Cow position: | chr25:19288266-19287971 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 287-419 |
| Cow position: | chr25:17560476-17560343 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 287-436 |
| Cow position: | chr25:6172059-6172209 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 320-457 |
| Cow position: | chr25:24659444-24659582 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 129, 0 |
Show alignments to all cow chromosomes.