Cow genome map
| Conread name: | Ss1.1-rplun0138_i19.5 |
| Conread position: | 1-207 |
| Cow position: | chr27:3996549-3996342 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 12, 199 |
| Conread position: | 1-389 |
| Cow position: | chr27:2364580-2364968 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 83 |
| Conread position: | 1-419 |
| Cow position: | chr27:26227123-26227535 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 93 |
| Conread position: | 1-423 |
| Cow position: | chr27:16034564-16034143 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 184 |
| Conread position: | 1-436 |
| Cow position: | chr27:15541157-15541593 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-437 |
| Cow position: | chr27:15278234-15277808 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 61 |
| Conread position: | 1-437 |
| Cow position: | chr27:16439153-16439593 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 43 |
| Conread position: | 1-437 |
| Cow position: | chr27:25002702-25002270 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 132 |
| Conread position: | 2-402 |
| Cow position: | chr27:23334993-23335409 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 60 |
| Conread position: | 2-431 |
| Cow position: | chr27:9993376-9992945 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-431 |
| Cow position: | chr27:14460627-14460198 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 196 |
| Conread position: | 2-431 |
| Cow position: | chr27:26324644-26325073 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 142 |
| Conread position: | 2-457 |
| Cow position: | chr27:25805051-25804607 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 35 |
| Conread position: | 2-463 |
| Cow position: | chr27:893039-893499 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 138 |
| Conread position: | 3-399 |
| Cow position: | chr27:25160520-25160908 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 71, 42 |
| Conread position: | 8-155 |
| Cow position: | chr27:8561424-8561574 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 8-463 |
| Cow position: | chr27:1209187-1209643 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 190 |
| Conread position: | 10-303 |
| Cow position: | chr27:28890565-28890855 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 216, 34 |
| Conread position: | 11-508 |
| Cow position: | chr27:27662740-27663233 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 93 |
| Conread position: | 21-436 |
| Cow position: | chr27:10010988-10010600 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 89, 100 |
| Conread position: | 31-514 |
| Cow position: | chr27:22316443-22316924 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 6 |
| Conread position: | 39-437 |
| Cow position: | chr27:5910729-5911128 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 159 |
| Conread position: | 44-437 |
| Cow position: | chr27:16432296-16432681 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 45 |
| Conread position: | 45-431 |
| Cow position: | chr27:27753324-27752937 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 153 |
| Conread position: | 77-427 |
| Cow position: | chr27:27051586-27051939 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 87 |
| Conread position: | 78-437 |
| Cow position: | chr27:18560290-18560646 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 145, 121 |
| Conread position: | 92-516 |
| Cow position: | chr27:26035136-26034718 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 271 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 132, 106 |
| Conread position: | 104-388 |
| Cow position: | chr27:27197438-27197169 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 90, 154 |
| Conread position: | 108-405 |
| Cow position: | chr27:15638420-15638124 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 90 |
| Conread position: | 152-519 |
| Cow position: | chr27:26556025-26555659 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 46 |
| Conread position: | 160-577 |
| Cow position: | chr27:8561531-8561944 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 76 |
| Conread position: | 257-427 |
| Cow position: | chr27:28078533-28078702 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 35, 8 |
Show alignments to all cow chromosomes.