Cow genome map

Conread name: Ss1.1-rplun0138_i19.5

Conread position: 1-145
Cow position: chr28:2989811-2989672 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 7, 0

Conread position: 1-147
Cow position: chr28:15681762-15681906 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 119
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 62, 0

Conread position: 1-263
Cow position: chr28:24652164-24652420 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 193
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 212, 137

Conread position: 1-289
Cow position: chr28:26426401-26426117 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 133

Conread position: 1-291
Cow position: chr28:15950854-15951142 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 103

Conread position: 1-393
Cow position: chr28:15920593-15920199 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position: chr28:1953003-1953429 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 140

Conread position: 1-427
Cow position: chr28:6780456-6780034 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 46

Conread position: 1-427
Cow position: chr28:7822130-7822557 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position: chr28:14750421-14750846 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 124

Conread position: 1-427
Cow position: chr28:24587306-24587734 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 198

Conread position: 1-431
Cow position: chr28:782268-782697 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 142

Conread position: 1-436
Cow position: chr28:9155412-9154977 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 61

Conread position: 1-436
Cow position: chr28:13441004-13440568 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-437
Cow position: chr28:9954009-9954442 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 44

Conread position: 1-449
Cow position: chr28:24667453-24667900 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 85

Conread position: 1-451
Cow position: chr28:2591789-2592235 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 61

Conread position: 1-455
Cow position: chr28:7901224-7901691 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 61

Conread position: 1-588
Cow position: chr28:5812581-5813139 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 62

Conread position: 2-120
Cow position: chr28:5752003-5751884 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 2-155
Cow position: chr28:15035622-15035470 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 61

Conread position: 2-404
Cow position: chr28:5565735-5566130 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 197

Conread position: 2-411
Cow position: chr28:1504729-1505135 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 34

Conread position: 2-426
Cow position: chr28:5114926-5114513 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 189

Conread position: 2-431
Cow position: chr28:7740367-7740783 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 34

Conread position: 2-431
Cow position: chr28:8378438-8378871 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position: chr28:10582112-10581682 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position: chr28:15378118-15377690 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position: chr28:17388355-17388784 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-447
Cow position: chr28:7001862-7002311 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 191

Conread position: 2-463
Cow position: chr28:2083478-2083930 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 60

Conread position: 2-463
Cow position: chr28:13459845-13460306 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 60

Conread position: 2-463
Cow position: chr28:14705798-14705335 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position: chr28:22261277-22260815 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position: chr28:32792505-32792044 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 60

Conread position: 2-463
Cow position: chr28:33252191-33252648 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 82

Conread position: 2-578
Cow position: chr28:7790424-7789836 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 61

Conread position: 2-584
Cow position: chr28:21358888-21359457 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 42

Conread position: 3-181
Cow position: chr28:17330648-17330474 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 96, 33

Conread position: 3-557
Cow position: chr28:21325664-21326209 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 79

Conread position: 8-404
Cow position: chr28:17667634-17667237 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-431
Cow position: chr28:3192911-3192489 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 132

Conread position: 8-437
Cow position: chr28:9137169-9136743 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 54

Conread position: 8-437
Cow position: chr28:18520581-18520150 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 158

Conread position: 8-463
Cow position: chr28:1814988-1814531 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-463
Cow position: chr28:12150195-12150639 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 42

Conread position: 9-424
Cow position: chr28:8721568-8721153 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 190

Conread position: 9-437
Cow position: chr28:1387514-1387091 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 189

Conread position: 9-557
Cow position: chr28:10619225-10618695 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 27

Conread position: 9-581
Cow position: chr28:34648824-34649401 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 115

Conread position: 23-228
Cow position: chr28:22233794-22233591 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 154
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 152, 0

Conread position: 26-453
Cow position: chr28:2724993-2724567 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 134

Conread position: 49-431
Cow position: chr28:12410299-12409923 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 13

Conread position: 49-437
Cow position: chr28:5378393-5378771 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 249
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 175, 86

Conread position: 65-410
Cow position: chr28:12233060-12232719 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 250
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 31, 74

Conread position: 77-437
Cow position: chr28:4380890-4380535 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 104

Conread position: 104-463
Cow position: chr28:5751730-5751369 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 5

Conread position: 105-423
Cow position: chr28:22065760-22065448 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 228
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 118, 56

Conread position: 111-463
Cow position: chr28:1167899-1167545 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 87

Conread position: 111-463
Cow position: chr28:34593961-34594315 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 87

Conread position: 130-431
Cow position: chr28:29819735-29820036 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 68

Conread position: 132-450
Cow position: chr28:567965-568276 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 211
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 92, 15

Conread position: 161-503
Cow position: chr28:2846140-2845805 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 37

Conread position: 166-560
Cow position: chr28:5797470-5797865 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 32

Conread position: 166-576
Cow position: chr28:2989678-2989259 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 12

Conread position: 168-463
Cow position: chr28:18181110-18180819 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 203
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 56, 30

Conread position: 172-437
Cow position: chr28:1931941-1931673 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 26

Conread position: 176-410
Cow position: chr28:5800672-5800902 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 163
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 46, 7

Conread position: 178-436
Cow position: chr28:17324301-17324036 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 21

Conread position: 181-389
Cow position: chr28:18101891-18101684 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 43, 18

Conread position: 194-542
Cow position: chr28:17312009-17312338 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 225
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 30, 98

Conread position: 200-521
Cow position: chr28:10463082-10462757 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 224
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 26, 68

Conread position: 213-452
Cow position: chr28:485479-485239 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 54

Conread position: 217-395
Cow position: chr28:22828103-22828283 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 9, 26

Conread position: 229-457
Cow position: chr28:15682222-15682443 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 87, 31

Conread position: 232-431
Cow position: chr28:22233293-22233097 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 159
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 33, 0

Conread position: 232-588
Cow position: chr28:10071089-10071434 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 33

Conread position: 237-508
Cow position: chr28:29092875-29092612 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 188
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 82, 30

Conread position: 254-427
Cow position: chr28:13490277-13490450 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 144
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 60, 11

Conread position: 256-451
Cow position: chr28:5937609-5937796 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 59, 9

Conread position: 266-436
Cow position: chr28:6539124-6538953 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 136
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 49, 0

Conread position: 267-436
Cow position: chr28:30805549-30805379 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 139
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 48, 0

Conread position: 289-463
Cow position: chr28:26426091-26425915 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 26, 153

Conread position: 303-437
Cow position: chr28:24652942-24652807 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 114
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 11, 0

Conread position: 322-518
Cow position: chr28:11357519-11357326 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 160, 0

Conread position: 367-585
Cow position: chr28:7817378-7817600 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 155
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 69, 104

Conread position: 380-578
Cow position: chr28:5764499-5764696 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 135
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 106, 0

Show alignments to all cow chromosomes.