Cow genome map
| Conread name: | Ss1.1-rplun0138_i19.5 |
| Conread position: | 1-141 |
| Cow position: | chr29:31121644-31121784 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-185 |
| Cow position: | chr29:43791021-43791202 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 1-186 |
| Cow position: | chr29:34609113-34608933 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 176, 135 |
| Conread position: | 1-250 |
| Cow position: | chr29:31180962-31181212 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 221, 197 |
| Conread position: | 1-275 |
| Cow position: | chr29:28060827-28060552 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 198 |
| Conread position: | 1-312 |
| Cow position: | chr29:15969312-15969002 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-322 |
| Cow position: | chr29:16109568-16109887 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 39 |
| Conread position: | 1-362 |
| Cow position: | chr29:32315879-32316241 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-413 |
| Cow position: | chr29:17662762-17663155 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 103 |
| Conread position: | 1-423 |
| Cow position: | chr29:27981079-27980658 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-425 |
| Cow position: | chr29:10848272-10847825 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 199 |
| Conread position: | 1-427 |
| Cow position: | chr29:610773-610347 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 71 |
| Conread position: | 1-427 |
| Cow position: | chr29:16769971-16770388 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 35 |
| Conread position: | 1-431 |
| Cow position: | chr29:19884908-19885338 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-432 |
| Cow position: | chr29:43366158-43365733 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 61 |
| Conread position: | 1-436 |
| Cow position: | chr29:15895012-15894574 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-436 |
| Cow position: | chr29:27250496-27250068 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-437 |
| Cow position: | chr29:11049121-11049553 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 109 |
| Conread position: | 1-437 |
| Cow position: | chr29:35196512-35196939 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 5 |
| Conread position: | 1-457 |
| Cow position: | chr29:35296713-35297168 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 142 |
| Conread position: | 1-500 |
| Cow position: | chr29:30811371-30811859 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 20 |
| Conread position: | 1-516 |
| Cow position: | chr29:104412-104913 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 124 |
| Conread position: | 1-520 |
| Cow position: | chr29:1715087-1715598 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 30 |
| Conread position: | 1-520 |
| Cow position: | chr29:15950345-15949836 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 42 |
| Conread position: | 2-263 |
| Cow position: | chr29:21246409-21246671 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-431 |
| Cow position: | chr29:7431376-7430951 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-431 |
| Cow position: | chr29:25932704-25932276 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 43 |
| Conread position: | 2-431 |
| Cow position: | chr29:26164983-26164554 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-431 |
| Cow position: | chr29:34799970-34799539 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-437 |
| Cow position: | chr29:2841529-2841098 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 197 |
| Conread position: | 2-437 |
| Cow position: | chr29:5957442-5957879 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 265 |
| Conread position: | 2-449 |
| Cow position: | chr29:40503139-40502696 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 123 |
| Conread position: | 2-450 |
| Cow position: | chr29:11855438-11855886 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 305 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 173, 118 |
| Conread position: | 2-451 |
| Cow position: | chr29:38226841-38227266 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 90 |
| Conread position: | 2-457 |
| Cow position: | chr29:32539650-32540106 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-458 |
| Cow position: | chr29:10824116-10823671 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 150 |
| Conread position: | 2-460 |
| Cow position: | chr29:16017295-16016855 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 220, 108 |
| Conread position: | 2-463 |
| Cow position: | chr29:2099684-2100147 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-463 |
| Cow position: | chr29:2689742-2690202 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 61 |
| Conread position: | 2-463 |
| Cow position: | chr29:6266654-6266199 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 157 |
| Conread position: | 2-463 |
| Cow position: | chr29:10648408-10647949 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 34 |
| Conread position: | 2-463 |
| Cow position: | chr29:16022369-16022832 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-463 |
| Cow position: | chr29:23975676-23976142 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 199 |
| Conread position: | 2-463 |
| Cow position: | chr29:43322399-43322856 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 3-258 |
| Cow position: | chr29:21427214-21426962 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 194 |
| Conread position: | 3-437 |
| Cow position: | chr29:2750551-2750146 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 33 |
| Conread position: | 3-437 |
| Cow position: | chr29:21543525-21543094 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 159 |
| Conread position: | 4-326 |
| Cow position: | chr29:13853180-13852861 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 58 |
| Conread position: | 5-166 |
| Cow position: | chr29:32640620-32640782 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 5-416 |
| Cow position: | chr29:14013315-14013718 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 54 |
| Conread position: | 5-416 |
| Cow position: | chr29:14073096-14072693 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 54 |
| Conread position: | 5-437 |
| Cow position: | chr29:27040921-27040497 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 130 |
| Conread position: | 8-248 |
| Cow position: | chr29:5983334-5983094 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 53 |
| Conread position: | 8-295 |
| Cow position: | chr29:24198776-24198489 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 170, 153 |
| Conread position: | 8-426 |
| Cow position: | chr29:48630-48216 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 54 |
| Conread position: | 8-431 |
| Cow position: | chr29:20251005-20251427 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 190 |
| Conread position: | 8-463 |
| Cow position: | chr29:19623401-19622945 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 81 |
| Conread position: | 8-463 |
| Cow position: | chr29:19652954-19653410 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 81 |
| Conread position: | 8-463 |
| Cow position: | chr29:39079860-39079409 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 132 |
| Conread position: | 9-427 |
| Cow position: | chr29:7840643-7841061 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 189 |
| Conread position: | 9-431 |
| Cow position: | chr29:45459563-45459984 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 34 |
| Conread position: | 15-463 |
| Cow position: | chr29:14585780-14586224 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 183 |
| Conread position: | 30-452 |
| Cow position: | chr29:670189-669768 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 168 |
| Conread position: | 39-431 |
| Cow position: | chr29:45587469-45587092 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 104 |
| Conread position: | 46-508 |
| Cow position: | chr29:803468-803007 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 45 |
| Conread position: | 49-491 |
| Cow position: | chr29:22966369-22965932 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 171, 52 |
| Conread position: | 68-427 |
| Cow position: | chr29:18857039-18856679 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 130 |
| Conread position: | 77-410 |
| Cow position: | chr29:42650199-42650534 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 121 |
| Conread position: | 77-410 |
| Cow position: | chr29:42802059-42802394 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 121 |
| Conread position: | 77-505 |
| Cow position: | chr29:19906540-19906971 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 271 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 128, 121 |
| Conread position: | 81-437 |
| Cow position: | chr29:2466418-2466059 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 117 |
| Conread position: | 89-427 |
| Cow position: | chr29:13581998-13582333 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 109 |
| Conread position: | 94-457 |
| Cow position: | chr29:9643828-9643461 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 105 |
| Conread position: | 98-456 |
| Cow position: | chr29:27845278-27845630 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 37, 46 |
| Conread position: | 106-459 |
| Cow position: | chr29:4056093-4056444 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 58, 29 |
| Conread position: | 125-432 |
| Cow position: | chr29:12796400-12796113 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 99, 25 |
| Conread position: | 140-437 |
| Cow position: | chr29:410548-410250 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 58 |
| Conread position: | 195-436 |
| Cow position: | chr29:34925505-34925753 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 223-436 |
| Cow position: | chr29:13669228-13669021 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 90, 44 |
| Conread position: | 238-427 |
| Cow position: | chr29:31181492-31181680 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 77, 27 |
| Conread position: | 247-514 |
| Cow position: | chr29:24709163-24708899 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 67, 18 |
| Conread position: | 254-457 |
| Cow position: | chr29:21426932-21426733 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 298-541 |
| Cow position: | chr29:14086313-14086073 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 184 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 16, 42 |
| Conread position: | 302-578 |
| Cow position: | chr29:5983070-5982796 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 11, 175 |
| Conread position: | 306-436 |
| Cow position: | chr29:15968718-15968585 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 358-559 |
| Cow position: | chr29:8331136-8330943 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 81, 0 |
Show alignments to all cow chromosomes.