Cow genome map

Conread name: Ss1.1-rplun0138_i19.5

Conread position: 1-141
Cow position:
Alignm length: 141
Alignm identity: 106
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-185
Cow position:
Alignm length: 185
Alignm identity: 140
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 8, 0

Conread position: 1-186
Cow position:
Alignm length: 187
Alignm identity: 131
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 176, 135

Conread position: 1-250
Cow position:
Alignm length: 252
Alignm identity: 186
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 221, 197

Conread position: 1-275
Cow position:
Alignm length: 278
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 198

Conread position: 1-312
Cow position:
Alignm length: 314
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-322
Cow position:
Alignm length: 325
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 39

Conread position: 1-362
Cow position:
Alignm length: 365
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-413
Cow position:
Alignm length: 416
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 103

Conread position: 1-423
Cow position:
Alignm length: 426
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-425
Cow position:
Alignm length: 450
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 199

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 71

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 35

Conread position: 1-431
Cow position:
Alignm length: 434
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-432
Cow position:
Alignm length: 443
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 61

Conread position: 1-436
Cow position:
Alignm length: 441
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-437
Cow position:
Alignm length: 440
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 109

Conread position: 1-437
Cow position:
Alignm length: 441
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 5

Conread position: 1-457
Cow position:
Alignm length: 461
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 142

Conread position: 1-500
Cow position:
Alignm length: 504
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 20

Conread position: 1-516
Cow position:
Alignm length: 519
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 124

Conread position: 1-520
Cow position:
Alignm length: 523
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 30

Conread position: 1-520
Cow position:
Alignm length: 526
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 42

Conread position: 2-263
Cow position:
Alignm length: 264
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 43

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position:
Alignm length: 434
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-437
Cow position:
Alignm length: 438
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 197

Conread position: 2-437
Cow position:
Alignm length: 440
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 265

Conread position: 2-449
Cow position:
Alignm length: 451
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 123

Conread position: 2-450
Cow position:
Alignm length: 460
Alignm identity: 305
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 173, 118

Conread position: 2-451
Cow position:
Alignm length: 451
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 90

Conread position: 2-457
Cow position:
Alignm length: 460
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-458
Cow position:
Alignm length: 462
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 150

Conread position: 2-460
Cow position:
Alignm length: 464
Alignm identity: 305
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 220, 108

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 61

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 157

Conread position: 2-463
Cow position:
Alignm length: 467
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 34

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position:
Alignm length: 469
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 199

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 3-258
Cow position:
Alignm length: 258
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 194

Conread position: 3-437
Cow position:
Alignm length: 438
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 33

Conread position: 3-437
Cow position:
Alignm length: 439
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 159

Conread position: 4-326
Cow position:
Alignm length: 326
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 58

Conread position: 5-166
Cow position:
Alignm length: 163
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 79, 0

Conread position: 5-416
Cow position:
Alignm length: 415
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 54

Conread position: 5-416
Cow position:
Alignm length: 415
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 54

Conread position: 5-437
Cow position:
Alignm length: 436
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 130

Conread position: 8-248
Cow position:
Alignm length: 244
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 53

Conread position: 8-295
Cow position:
Alignm length: 291
Alignm identity: 195
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 170, 153

Conread position: 8-426
Cow position:
Alignm length: 423
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 54

Conread position: 8-431
Cow position:
Alignm length: 426
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-463
Cow position:
Alignm length: 460
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 81

Conread position: 8-463
Cow position:
Alignm length: 462
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 81

Conread position: 8-463
Cow position:
Alignm length: 461
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 132

Conread position: 9-427
Cow position:
Alignm length: 422
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 189

Conread position: 9-431
Cow position:
Alignm length: 429
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 34

Conread position: 15-463
Cow position:
Alignm length: 451
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 183

Conread position: 30-452
Cow position:
Alignm length: 426
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 168

Conread position: 39-431
Cow position:
Alignm length: 396
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 104

Conread position: 46-508
Cow position:
Alignm length: 474
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 45

Conread position: 49-491
Cow position:
Alignm length: 447
Alignm identity: 284
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 171, 52

Conread position: 68-427
Cow position:
Alignm length: 363
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 130

Conread position: 77-410
Cow position:
Alignm length: 339
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 121

Conread position: 77-410
Cow position:
Alignm length: 339
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 121

Conread position: 77-505
Cow position:
Alignm length: 439
Alignm identity: 271
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 128, 121

Conread position: 81-437
Cow position:
Alignm length: 362
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 117

Conread position: 89-427
Cow position:
Alignm length: 342
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 109

Conread position: 94-457
Cow position:
Alignm length: 373
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 105

Conread position: 98-456
Cow position:
Alignm length: 364
Alignm identity: 233
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 37, 46

Conread position: 106-459
Cow position:
Alignm length: 361
Alignm identity: 249
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 58, 29

Conread position: 125-432
Cow position:
Alignm length: 311
Alignm identity: 228
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 99, 25

Conread position: 140-437
Cow position:
Alignm length: 301
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 58

Conread position: 195-436
Cow position:
Alignm length: 250
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 77

Conread position: 223-436
Cow position:
Alignm length: 216
Alignm identity: 152
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 90, 44

Conread position: 238-427
Cow position:
Alignm length: 191
Alignm identity: 147
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 77, 27

Conread position: 247-514
Cow position:
Alignm length: 271
Alignm identity: 182
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 67, 18

Conread position: 254-457
Cow position:
Alignm length: 207
Alignm identity: 159
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 60, 11

Conread position: 298-541
Cow position:
Alignm length: 246
Alignm identity: 184
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 16, 42

Conread position: 302-578
Cow position:
Alignm length: 282
Alignm identity: 203
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 11, 175

Conread position: 306-436
Cow position:
Alignm length: 134
Alignm identity: 112
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 9, 0

Conread position: 358-559
Cow position:
Alignm length: 202
Alignm identity: 146
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 81, 0

Show alignments to all cow chromosomes.