Cow genome map
| Conread name: | Ss1.1-rplun0138_i19.5 |
| Conread position: | 1-140 |
| Cow position: | chr4:23114615-23114476 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-141 |
| Cow position: | chr4:10408342-10408482 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-263 |
| Cow position: | chr4:1371453-1371180 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 96, 67 |
| Conread position: | 1-391 |
| Cow position: | chr4:39272379-39271985 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 197 |
| Conread position: | 1-406 |
| Cow position: | chr4:528554-528960 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 197 |
| Conread position: | 1-419 |
| Cow position: | chr4:6269067-6268650 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-423 |
| Cow position: | chr4:158076-158499 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-423 |
| Cow position: | chr4:16056165-16056585 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 148 |
| Conread position: | 1-426 |
| Cow position: | chr4:32211728-32212154 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-427 |
| Cow position: | chr4:101368-100945 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 140 |
| Conread position: | 1-427 |
| Cow position: | chr4:1931059-1930636 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 37 |
| Conread position: | 1-427 |
| Cow position: | chr4:3125342-3125783 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 119 |
| Conread position: | 1-427 |
| Cow position: | chr4:5879732-5880153 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 97 |
| Conread position: | 1-427 |
| Cow position: | chr4:18424959-18424537 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 160 |
| Conread position: | 1-431 |
| Cow position: | chr4:27333004-27333427 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 191 |
| Conread position: | 1-431 |
| Cow position: | chr4:47718046-47717616 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 191 |
| Conread position: | 1-431 |
| Cow position: | chr4:47764609-47764179 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 165 |
| Conread position: | 1-436 |
| Cow position: | chr4:602555-602990 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 1-436 |
| Cow position: | chr4:13547589-13548026 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 198 |
| Conread position: | 1-436 |
| Cow position: | chr4:65223973-65223537 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-437 |
| Cow position: | chr4:66925566-66925995 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 103 |
| Conread position: | 1-447 |
| Cow position: | chr4:11618422-11618859 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 35 |
| Conread position: | 1-458 |
| Cow position: | chr4:66179427-66178969 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 197 |
| Conread position: | 1-516 |
| Cow position: | chr4:11393775-11393269 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 61 |
| Conread position: | 1-577 |
| Cow position: | chr4:46663763-46664316 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 32 |
| Conread position: | 1-578 |
| Cow position: | chr4:1464367-1463801 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 1-585 |
| Cow position: | chr4:21338427-21337867 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 35 |
| Conread position: | 1-588 |
| Cow position: | chr4:28830601-28831171 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 62 |
| Conread position: | 2-137 |
| Cow position: | chr4:12607943-12607808 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 123 |
| Conread position: | 2-175 |
| Cow position: | chr4:21564708-21564874 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 2-260 |
| Cow position: | chr4:31668876-31669129 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 194 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 222, 138 |
| Conread position: | 2-383 |
| Cow position: | chr4:4905716-4906090 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 118 |
| Conread position: | 2-385 |
| Cow position: | chr4:62565550-62565924 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 260 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 25, 40 |
| Conread position: | 2-410 |
| Cow position: | chr4:29532152-29531744 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 196 |
| Conread position: | 2-423 |
| Cow position: | chr4:25600050-25599635 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 34 |
| Conread position: | 2-426 |
| Cow position: | chr4:24445637-24445220 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 96 |
| Conread position: | 2-431 |
| Cow position: | chr4:355473-355900 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 52 |
| Conread position: | 2-431 |
| Cow position: | chr4:6490784-6490374 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 60 |
| Conread position: | 2-431 |
| Cow position: | chr4:33073535-33073119 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 123 |
| Conread position: | 2-431 |
| Cow position: | chr4:33493374-33493815 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 134 |
| Conread position: | 2-431 |
| Cow position: | chr4:43320074-43319656 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-431 |
| Cow position: | chr4:43880671-43881099 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-431 |
| Cow position: | chr4:44724645-44725074 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-431 |
| Cow position: | chr4:45049737-45049308 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 197 |
| Conread position: | 2-437 |
| Cow position: | chr4:18516458-18516894 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-449 |
| Cow position: | chr4:57979193-57979638 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 177 |
| Conread position: | 2-460 |
| Cow position: | chr4:48025964-48026417 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 18 |
| Conread position: | 2-463 |
| Cow position: | chr4:6214990-6214539 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 303 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 222, 134 |
| Conread position: | 2-463 |
| Cow position: | chr4:12241657-12241193 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 196 |
| Conread position: | 2-463 |
| Cow position: | chr4:17926692-17926230 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 103 |
| Conread position: | 2-463 |
| Cow position: | chr4:22471751-22472190 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 302 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 283, 37 |
| Conread position: | 2-466 |
| Cow position: | chr4:13492138-13492597 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 196 |
| Conread position: | 2-474 |
| Cow position: | chr4:1497190-1496728 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 319 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 41, 93 |
| Conread position: | 2-487 |
| Cow position: | chr4:969475-968996 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 19 |
| Conread position: | 3-451 |
| Cow position: | chr4:34185300-34184870 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 33 |
| Conread position: | 8-416 |
| Cow position: | chr4:3961160-3961569 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 170 |
| Conread position: | 8-431 |
| Cow position: | chr4:16359455-16359874 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 28 |
| Conread position: | 8-431 |
| Cow position: | chr4:36895942-36896358 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 159 |
| Conread position: | 8-431 |
| Cow position: | chr4:41331009-41331429 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 132 |
| Conread position: | 9-427 |
| Cow position: | chr4:30307883-30307471 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 134 |
| Conread position: | 9-505 |
| Cow position: | chr4:17530850-17530367 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 12 |
| Conread position: | 28-413 |
| Cow position: | chr4:41119600-41119987 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 171 |
| Conread position: | 29-588 |
| Cow position: | chr4:60264975-60264420 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 112 |
| Conread position: | 51-524 |
| Cow position: | chr4:8598537-8598074 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 85 |
| Conread position: | 63-506 |
| Cow position: | chr4:15263367-15262938 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 305 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 165, 98 |
| Conread position: | 73-440 |
| Cow position: | chr4:42927360-42927722 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 129 |
| Conread position: | 93-335 |
| Cow position: | chr4:60673526-60673758 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 17, 31 |
| Conread position: | 104-431 |
| Cow position: | chr4:12586962-12587289 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 94 |
| Conread position: | 106-435 |
| Cow position: | chr4:5023468-5023148 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 11, 66 |
| Conread position: | 111-504 |
| Cow position: | chr4:47517994-47518369 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 333, 32 |
| Conread position: | 112-437 |
| Cow position: | chr4:61256568-61256889 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 86 |
| Conread position: | 125-436 |
| Cow position: | chr4:38957588-38957283 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 55 |
| Conread position: | 125-436 |
| Cow position: | chr4:61716497-61716203 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 99, 18 |
| Conread position: | 138-436 |
| Cow position: | chr4:9355073-9354774 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 60 |
| Conread position: | 178-505 |
| Cow position: | chr4:11384696-11385020 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 225 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 48, 91 |
| Conread position: | 189-343 |
| Cow position: | chr4:27443203-27443361 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 35, 9 |
| Conread position: | 198-436 |
| Cow position: | chr4:9587020-9587260 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 71 |
| Conread position: | 224-434 |
| Cow position: | chr4:54157784-54157988 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 61, 41 |
| Conread position: | 242-431 |
| Cow position: | chr4:4415885-4416073 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 154 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 73, 23 |
| Conread position: | 247-431 |
| Cow position: | chr4:10408485-10408664 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 69, 18 |
| Conread position: | 252-451 |
| Cow position: | chr4:51044116-51043921 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 177, 15 |
| Conread position: | 265-463 |
| Cow position: | chr4:31565480-31565280 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 274-427 |
| Cow position: | chr4:41954307-41954462 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 274-427 |
| Cow position: | chr4:41957962-41958117 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 289-427 |
| Cow position: | chr4:18190255-18190393 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 26, 50 |
| Conread position: | 293-436 |
| Cow position: | chr4:31669122-31669267 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 22, 138 |
Show alignments to all cow chromosomes.