Cow genome map

Conread name: Ss1.1-rplun0138_i19.5

Conread position: 1-198
Cow position:
Alignm length: 202
Alignm identity: 141
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 77, 20

Conread position: 1-215
Cow position:
Alignm length: 219
Alignm identity: 164
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 57, 164

Conread position: 1-238
Cow position:
Alignm length: 240
Alignm identity: 178
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 222, 197

Conread position: 1-241
Cow position:
Alignm length: 243
Alignm identity: 160
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 215, 114

Conread position: 1-256
Cow position:
Alignm length: 258
Alignm identity: 183
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 222, 197

Conread position: 1-268
Cow position:
Alignm length: 271
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 160

Conread position: 1-282
Cow position:
Alignm length: 282
Alignm identity: 193
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 36, 0

Conread position: 1-323
Cow position:
Alignm length: 327
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 62

Conread position: 1-325
Cow position:
Alignm length: 328
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-326
Cow position:
Alignm length: 328
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-392
Cow position:
Alignm length: 395
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 61

Conread position: 1-404
Cow position:
Alignm length: 415
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 88

Conread position: 1-412
Cow position:
Alignm length: 417
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 99

Conread position: 1-412
Cow position:
Alignm length: 416
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 38

Conread position: 1-423
Cow position:
Alignm length: 432
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 197

Conread position: 1-423
Cow position:
Alignm length: 429
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 68

Conread position: 1-426
Cow position:
Alignm length: 433
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 214

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 160

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 431
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 184

Conread position: 1-427
Cow position:
Alignm length: 431
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 198

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 428
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 197

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 139

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 13

Conread position: 1-432
Cow position:
Alignm length: 435
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 38

Conread position: 1-436
Cow position:
Alignm length: 440
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 198

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-436
Cow position:
Alignm length: 441
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 160

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 172

Conread position: 1-437
Cow position:
Alignm length: 442
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 67

Conread position: 1-437
Cow position:
Alignm length: 441
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 123

Conread position: 1-437
Cow position:
Alignm length: 438
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 142

Conread position: 1-437
Cow position:
Alignm length: 441
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 53

Conread position: 1-437
Cow position:
Alignm length: 438
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 12

Conread position: 1-437
Cow position:
Alignm length: 443
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 138

Conread position: 1-440
Cow position:
Alignm length: 444
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 34

Conread position: 1-452
Cow position:
Alignm length: 456
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-457
Cow position:
Alignm length: 461
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 36

Conread position: 1-459
Cow position:
Alignm length: 462
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 42

Conread position: 1-497
Cow position:
Alignm length: 508
Alignm identity: 308
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 66, 12

Conread position: 1-508
Cow position:
Alignm length: 512
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 135

Conread position: 1-508
Cow position:
Alignm length: 515
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 138

Conread position: 1-518
Cow position:
Alignm length: 523
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 42

Conread position: 1-520
Cow position:
Alignm length: 534
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 8

Conread position: 1-578
Cow position:
Alignm length: 586
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 118

Conread position: 1-588
Cow position:
Alignm length: 593
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 85

Conread position: 2-246
Cow position:
Alignm length: 247
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 123

Conread position: 2-261
Cow position:
Alignm length: 269
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 203

Conread position: 2-388
Cow position:
Alignm length: 390
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-391
Cow position:
Alignm length: 394
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 202

Conread position: 2-395
Cow position:
Alignm length: 397
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 120

Conread position: 2-422
Cow position:
Alignm length: 424
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 34

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 117

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 34

Conread position: 2-433
Cow position:
Alignm length: 437
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 7

Conread position: 2-437
Cow position:
Alignm length: 439
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 39

Conread position: 2-437
Cow position:
Alignm length: 439
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 2-439
Cow position:
Alignm length: 444
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 38

Conread position: 2-460
Cow position:
Alignm length: 462
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 2-460
Cow position:
Alignm length: 462
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 26

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 60

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position:
Alignm length: 467
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 60

Conread position: 2-465
Cow position:
Alignm length: 468
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 191

Conread position: 2-497
Cow position:
Alignm length: 508
Alignm identity: 329
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 94, 60

Conread position: 3-457
Cow position:
Alignm length: 457
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 448, 37

Conread position: 4-437
Cow position:
Alignm length: 439
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 32

Conread position: 5-312
Cow position:
Alignm length: 310
Alignm identity: 212
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 219, 193

Conread position: 5-520
Cow position:
Alignm length: 523
Alignm identity: 336
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 11, 59

Conread position: 8-419
Cow position:
Alignm length: 426
Alignm identity: 275
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 177, 132

Conread position: 8-431
Cow position:
Alignm length: 427
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 190

Conread position: 8-463
Cow position:
Alignm length: 467
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 112

Conread position: 8-504
Cow position:
Alignm length: 507
Alignm identity: 329
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 139, 21

Conread position: 9-174
Cow position:
Alignm length: 166
Alignm identity: 118
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 9-277
Cow position:
Alignm length: 271
Alignm identity: 175
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 215, 47

Conread position: 9-408
Cow position:
Alignm length: 403
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 104

Conread position: 9-412
Cow position:
Alignm length: 407
Alignm identity: 265
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 14, 36

Conread position: 9-457
Cow position:
Alignm length: 452
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 176

Conread position: 10-457
Cow position:
Alignm length: 451
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 151

Conread position: 23-353
Cow position:
Alignm length: 334
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 175

Conread position: 24-518
Cow position:
Alignm length: 503
Alignm identity: 325
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 172, 47

Conread position: 31-551
Cow position:
Alignm length: 525
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 32

Conread position: 39-343
Cow position:
Alignm length: 308
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 122

Conread position: 39-431
Cow position:
Alignm length: 396
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 69

Conread position: 41-426
Cow position:
Alignm length: 389
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 157

Conread position: 44-437
Cow position:
Alignm length: 397
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 81

Conread position: 45-350
Cow position:
Alignm length: 313
Alignm identity: 184
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 139, 34

Conread position: 49-422
Cow position:
Alignm length: 380
Alignm identity: 255
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 125, 25

Conread position: 54-434
Cow position:
Alignm length: 387
Alignm identity: 251
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 128, 83

Conread position: 77-520
Cow position:
Alignm length: 448
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 24

Conread position: 86-302
Cow position:
Alignm length: 221
Alignm identity: 172
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 21, 114

Conread position: 94-399
Cow position:
Alignm length: 312
Alignm identity: 216
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 76, 63

Conread position: 100-437
Cow position:
Alignm length: 341
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 98

Conread position: 101-324
Cow position:
Alignm length: 227
Alignm identity: 156
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 123, 43

Conread position: 107-441
Cow position:
Alignm length: 340
Alignm identity: 232
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 110, 8

Conread position: 114-505
Cow position:
Alignm length: 403
Alignm identity: 270
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 21, 52

Conread position: 116-382
Cow position:
Alignm length: 270
Alignm identity: 200
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 107, 45

Conread position: 124-508
Cow position:
Alignm length: 392
Alignm identity: 257
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 100, 37

Conread position: 125-300
Cow position:
Alignm length: 180
Alignm identity: 138
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 87, 15

Conread position: 127-454
Cow position:
Alignm length: 334
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 75

Conread position: 137-434
Cow position:
Alignm length: 301
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 29

Conread position: 138-463
Cow position:
Alignm length: 330
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 60

Conread position: 152-410
Cow position:
Alignm length: 268
Alignm identity: 198
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 25, 33

Conread position: 161-522
Cow position:
Alignm length: 367
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 37

Conread position: 182-417
Cow position:
Alignm length: 237
Alignm identity: 182
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 132, 18

Conread position: 183-497
Cow position:
Alignm length: 317
Alignm identity: 206
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 43, 17

Conread position: 183-504
Cow position:
Alignm length: 330
Alignm identity: 217
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 41, 16

Conread position: 194-437
Cow position:
Alignm length: 258
Alignm identity: 199
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 30, 73

Conread position: 197-452
Cow position:
Alignm length: 259
Alignm identity: 162
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 27, 70

Conread position: 198-437
Cow position:
Alignm length: 240
Alignm identity: 174
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 42, 0

Conread position: 219-436
Cow position:
Alignm length: 220
Alignm identity: 152
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 65, 11

Conread position: 224-503
Cow position:
Alignm length: 284
Alignm identity: 186
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 90, 41

Conread position: 232-437
Cow position:
Alignm length: 207
Alignm identity: 164
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 82, 25

Conread position: 233-437
Cow position:
Alignm length: 207
Alignm identity: 163
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 82, 32

Conread position: 242-427
Cow position:
Alignm length: 187
Alignm identity: 150
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 73, 23

Conread position: 256-436
Cow position:
Alignm length: 182
Alignm identity: 148
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 59, 11

Conread position: 257-453
Cow position:
Alignm length: 199
Alignm identity: 137
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 56, 89

Conread position: 265-427
Cow position:
Alignm length: 164
Alignm identity: 133
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 50, 0

Conread position: 265-521
Cow position:
Alignm length: 265
Alignm identity: 183
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 48, 77

Conread position: 279-441
Cow position:
Alignm length: 173
Alignm identity: 134
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 18, 158

Conread position: 283-522
Cow position:
Alignm length: 243
Alignm identity: 165
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 35, 91

Conread position: 292-525
Cow position:
Alignm length: 237
Alignm identity: 175
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 22, 0

Conread position: 292-525
Cow position:
Alignm length: 237
Alignm identity: 175
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 22, 0

Conread position: 297-436
Cow position:
Alignm length: 140
Alignm identity: 113
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 12, 0

Conread position: 305-436
Cow position:
Alignm length: 133
Alignm identity: 108
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 10, 0

Conread position: 307-437
Cow position:
Alignm length: 132
Alignm identity: 107
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 7, 0

Conread position: 312-588
Cow position:
Alignm length: 277
Alignm identity: 194
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 55, 0

Conread position: 314-427
Cow position:
Alignm length: 114
Alignm identity: 93
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 327-436
Cow position:
Alignm length: 110
Alignm identity: 93
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 328-427
Cow position:
Alignm length: 100
Alignm identity: 87
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 328-436
Cow position:
Alignm length: 109
Alignm identity: 88
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.