Cow genome map

Conread name: Ss1.1-rplun0138_i19.5

Conread position: 1-126
Cow position:
Alignm length: 126
Alignm identity: 97
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-127
Cow position:
Alignm length: 128
Alignm identity: 101
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 115, 61

Conread position: 1-139
Cow position:
Alignm length: 139
Alignm identity: 113
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 50, 0

Conread position: 1-161
Cow position:
Alignm length: 162
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 151, 61

Conread position: 1-276
Cow position:
Alignm length: 276
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 0

Conread position: 1-359
Cow position:
Alignm length: 363
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 119

Conread position: 1-374
Cow position:
Alignm length: 377
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 43

Conread position: 1-384
Cow position:
Alignm length: 387
Alignm identity: 264
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 222, 61

Conread position: 1-386
Cow position:
Alignm length: 397
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 168

Conread position: 1-422
Cow position:
Alignm length: 425
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-422
Cow position:
Alignm length: 431
Alignm identity: 295
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 95, 168

Conread position: 1-422
Cow position:
Alignm length: 425
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-423
Cow position:
Alignm length: 426
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 198

Conread position: 1-423
Cow position:
Alignm length: 426
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-423
Cow position:
Alignm length: 431
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-423
Cow position:
Alignm length: 426
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 160

Conread position: 1-427
Cow position:
Alignm length: 429
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 30

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 103

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 140

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 179

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 169

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 143

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 97

Conread position: 1-427
Cow position:
Alignm length: 435
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 79

Conread position: 1-427
Cow position:
Alignm length: 434
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 201

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 160

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 440
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 207

Conread position: 1-436
Cow position:
Alignm length: 441
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 39

Conread position: 1-437
Cow position:
Alignm length: 441
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 15

Conread position: 1-437
Cow position:
Alignm length: 439
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 198

Conread position: 1-437
Cow position:
Alignm length: 440
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 197

Conread position: 1-437
Cow position:
Alignm length: 453
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 160

Conread position: 1-437
Cow position:
Alignm length: 441
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 198

Conread position: 1-451
Cow position:
Alignm length: 467
Alignm identity: 306
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 74, 125

Conread position: 1-456
Cow position:
Alignm length: 478
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 281

Conread position: 1-504
Cow position:
Alignm length: 517
Alignm identity: 338
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 51, 41

Conread position: 1-508
Cow position:
Alignm length: 511
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 88

Conread position: 1-516
Cow position:
Alignm length: 522
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 62

Conread position: 1-516
Cow position:
Alignm length: 521
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 61

Conread position: 1-522
Cow position:
Alignm length: 527
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 86

Conread position: 1-525
Cow position:
Alignm length: 529
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 61

Conread position: 1-588
Cow position:
Alignm length: 599
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 202

Conread position: 2-146
Cow position:
Alignm length: 145
Alignm identity: 108
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 2-158
Cow position:
Alignm length: 158
Alignm identity: 121
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 48, 41

Conread position: 2-159
Cow position:
Alignm length: 158
Alignm identity: 116
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 2-191
Cow position:
Alignm length: 190
Alignm identity: 143
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 102, 0

Conread position: 2-262
Cow position:
Alignm length: 263
Alignm identity: 169
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 222, 139

Conread position: 2-404
Cow position:
Alignm length: 406
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 138

Conread position: 2-404
Cow position:
Alignm length: 406
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 139

Conread position: 2-431
Cow position:
Alignm length: 457
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 208

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 76

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 117

Conread position: 2-436
Cow position:
Alignm length: 441
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 169

Conread position: 2-437
Cow position:
Alignm length: 439
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 130

Conread position: 2-437
Cow position:
Alignm length: 439
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 18

Conread position: 2-437
Cow position:
Alignm length: 439
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-446
Cow position:
Alignm length: 450
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-447
Cow position:
Alignm length: 449
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 18

Conread position: 2-447
Cow position:
Alignm length: 449
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 196

Conread position: 2-453
Cow position:
Alignm length: 455
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-457
Cow position:
Alignm length: 469
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 66

Conread position: 2-463
Cow position:
Alignm length: 465
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 191

Conread position: 2-463
Cow position:
Alignm length: 471
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 52

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 138

Conread position: 2-463
Cow position:
Alignm length: 469
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 141

Conread position: 2-463
Cow position:
Alignm length: 467
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 26

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 164

Conread position: 2-463
Cow position:
Alignm length: 470
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 159

Conread position: 2-466
Cow position:
Alignm length: 471
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 201

Conread position: 2-466
Cow position:
Alignm length: 476
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 181

Conread position: 2-588
Cow position:
Alignm length: 590
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 198

Conread position: 3-256
Cow position:
Alignm length: 256
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 195

Conread position: 3-427
Cow position:
Alignm length: 427
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 195

Conread position: 3-457
Cow position:
Alignm length: 460
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 195

Conread position: 4-437
Cow position:
Alignm length: 453
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 50

Conread position: 5-326
Cow position:
Alignm length: 343
Alignm identity: 238
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 131, 280

Conread position: 5-434
Cow position:
Alignm length: 435
Alignm identity: 289
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 219, 131

Conread position: 8-169
Cow position:
Alignm length: 162
Alignm identity: 123
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 91, 0

Conread position: 8-282
Cow position:
Alignm length: 278
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 83

Conread position: 8-377
Cow position:
Alignm length: 385
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 190

Conread position: 8-426
Cow position:
Alignm length: 423
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 112

Conread position: 8-431
Cow position:
Alignm length: 427
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-433
Cow position:
Alignm length: 431
Alignm identity: 279
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 164, 128

Conread position: 8-458
Cow position:
Alignm length: 458
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 98

Conread position: 8-462
Cow position:
Alignm length: 459
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 153

Conread position: 8-463
Cow position:
Alignm length: 460
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 54

Conread position: 8-488
Cow position:
Alignm length: 482
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 189

Conread position: 10-262
Cow position:
Alignm length: 256
Alignm identity: 190
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 142, 18

Conread position: 10-417
Cow position:
Alignm length: 414
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 57

Conread position: 15-453
Cow position:
Alignm length: 449
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 76

Conread position: 29-520
Cow position:
Alignm length: 506
Alignm identity: 327
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 195, 33

Conread position: 44-410
Cow position:
Alignm length: 378
Alignm identity: 240
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 10, 45

Conread position: 49-503
Cow position:
Alignm length: 459
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 150

Conread position: 58-517
Cow position:
Alignm length: 473
Alignm identity: 304
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 166, 135

Conread position: 64-437
Cow position:
Alignm length: 379
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 41

Conread position: 68-427
Cow position:
Alignm length: 363
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 36

Conread position: 72-496
Cow position:
Alignm length: 428
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 84

Conread position: 80-440
Cow position:
Alignm length: 370
Alignm identity: 242
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 92, 81

Conread position: 86-436
Cow position:
Alignm length: 354
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 112

Conread position: 94-450
Cow position:
Alignm length: 360
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 25

Conread position: 98-422
Cow position:
Alignm length: 332
Alignm identity: 208
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 126, 52

Conread position: 105-399
Cow position:
Alignm length: 301
Alignm identity: 212
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 9, 95

Conread position: 107-427
Cow position:
Alignm length: 324
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 40

Conread position: 111-352
Cow position:
Alignm length: 245
Alignm identity: 172
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 113, 67

Conread position: 114-389
Cow position:
Alignm length: 280
Alignm identity: 196
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 103, 7

Conread position: 116-427
Cow position:
Alignm length: 313
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 82

Conread position: 135-454
Cow position:
Alignm length: 328
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 14

Conread position: 152-332
Cow position:
Alignm length: 186
Alignm identity: 138
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 34, 49

Conread position: 161-560
Cow position:
Alignm length: 403
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 37

Conread position: 163-436
Cow position:
Alignm length: 278
Alignm identity: 207
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 11, 23

Conread position: 195-436
Cow position:
Alignm length: 248
Alignm identity: 173
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 36, 73

Conread position: 200-395
Cow position:
Alignm length: 202
Alignm identity: 142
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 24, 73

Conread position: 223-423
Cow position:
Alignm length: 202
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 42

Conread position: 257-432
Cow position:
Alignm length: 177
Alignm identity: 140
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 149, 50

Conread position: 273-554
Cow position:
Alignm length: 285
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 63

Conread position: 276-560
Cow position:
Alignm length: 286
Alignm identity: 203
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 38, 136

Conread position: 294-462
Cow position:
Alignm length: 170
Alignm identity: 125
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 21, 0

Conread position: 300-398
Cow position:
Alignm length: 100
Alignm identity: 85
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 301-457
Cow position:
Alignm length: 158
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 111, 139

Conread position: 304-436
Cow position:
Alignm length: 134
Alignm identity: 110
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 11, 0

Conread position: 306-437
Cow position:
Alignm length: 133
Alignm identity: 106
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 10, 0

Conread position: 308-436
Cow position:
Alignm length: 130
Alignm identity: 99
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 7, 109

Conread position: 308-437
Cow position:
Alignm length: 131
Alignm identity: 101
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 6, 0

Conread position: 328-427
Cow position:
Alignm length: 100
Alignm identity: 85
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 329-436
Cow position:
Alignm length: 108
Alignm identity: 90
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.