Cow genome map

Conread name: Ss1.1-rplun0138_i19.5

Conread position: 1-165
Cow position:
Alignm length: 165
Alignm identity: 119
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 1-221
Cow position:
Alignm length: 221
Alignm identity: 166
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 97, 0

Conread position: 1-258
Cow position:
Alignm length: 261
Alignm identity: 193
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 215, 61

Conread position: 1-260
Cow position:
Alignm length: 262
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-263
Cow position:
Alignm length: 265
Alignm identity: 180
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 223, 131

Conread position: 1-275
Cow position:
Alignm length: 277
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-328
Cow position:
Alignm length: 331
Alignm identity: 231
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 223, 61

Conread position: 1-346
Cow position:
Alignm length: 350
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 137

Conread position: 1-353
Cow position:
Alignm length: 356
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 103

Conread position: 1-365
Cow position:
Alignm length: 369
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 159

Conread position: 1-366
Cow position:
Alignm length: 378
Alignm identity: 248
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 24, 18

Conread position: 1-370
Cow position:
Alignm length: 373
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 202

Conread position: 1-375
Cow position:
Alignm length: 378
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 22

Conread position: 1-391
Cow position:
Alignm length: 396
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 49

Conread position: 1-414
Cow position:
Alignm length: 417
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 19

Conread position: 1-426
Cow position:
Alignm length: 429
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 121

Conread position: 1-426
Cow position:
Alignm length: 430
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 59

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 432
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 121

Conread position: 1-427
Cow position:
Alignm length: 431
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 121

Conread position: 1-427
Cow position:
Alignm length: 432
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 99

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 103

Conread position: 1-427
Cow position:
Alignm length: 431
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 119

Conread position: 1-427
Cow position:
Alignm length: 431
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 119

Conread position: 1-427
Cow position:
Alignm length: 436
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 27

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 148

Conread position: 1-435
Cow position:
Alignm length: 440
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 24

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-437
Cow position:
Alignm length: 441
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 103

Conread position: 1-437
Cow position:
Alignm length: 439
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 61

Conread position: 1-437
Cow position:
Alignm length: 441
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 61

Conread position: 1-457
Cow position:
Alignm length: 459
Alignm identity: 293
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 316, 44

Conread position: 1-505
Cow position:
Alignm length: 512
Alignm identity: 318
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 108, 200

Conread position: 1-505
Cow position:
Alignm length: 507
Alignm identity: 332
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 196, 61

Conread position: 1-514
Cow position:
Alignm length: 528
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 71

Conread position: 1-516
Cow position:
Alignm length: 523
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 42

Conread position: 1-516
Cow position:
Alignm length: 521
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-520
Cow position:
Alignm length: 523
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 170

Conread position: 1-525
Cow position:
Alignm length: 528
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 59

Conread position: 1-581
Cow position:
Alignm length: 586
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 124

Conread position: 2-123
Cow position:
Alignm length: 122
Alignm identity: 97
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 2-196
Cow position:
Alignm length: 197
Alignm identity: 145
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 100, 35

Conread position: 2-276
Cow position:
Alignm length: 277
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 186

Conread position: 2-312
Cow position:
Alignm length: 311
Alignm identity: 209
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 112, 0

Conread position: 2-376
Cow position:
Alignm length: 388
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 35

Conread position: 2-417
Cow position:
Alignm length: 420
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 12

Conread position: 2-427
Cow position:
Alignm length: 430
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 34

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 60

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 133

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 138

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position:
Alignm length: 435
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 197

Conread position: 2-431
Cow position:
Alignm length: 448
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 211

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 140

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 139

Conread position: 2-433
Cow position:
Alignm length: 436
Alignm identity: 289
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 162, 134

Conread position: 2-437
Cow position:
Alignm length: 444
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 143

Conread position: 2-437
Cow position:
Alignm length: 457
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-447
Cow position:
Alignm length: 451
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 2-451
Cow position:
Alignm length: 453
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-456
Cow position:
Alignm length: 460
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 123

Conread position: 2-457
Cow position:
Alignm length: 467
Alignm identity: 313
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 214, 140

Conread position: 2-463
Cow position:
Alignm length: 474
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 34

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-488
Cow position:
Alignm length: 490
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-578
Cow position:
Alignm length: 593
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 7

Conread position: 3-431
Cow position:
Alignm length: 432
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 140

Conread position: 3-436
Cow position:
Alignm length: 437
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 190

Conread position: 3-437
Cow position:
Alignm length: 438
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 59

Conread position: 3-444
Cow position:
Alignm length: 448
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 59

Conread position: 3-463
Cow position:
Alignm length: 465
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 195

Conread position: 3-463
Cow position:
Alignm length: 467
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 59

Conread position: 3-588
Cow position:
Alignm length: 590
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 112

Conread position: 4-262
Cow position:
Alignm length: 260
Alignm identity: 178
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 221, 39

Conread position: 4-306
Cow position:
Alignm length: 305
Alignm identity: 210
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 220, 25

Conread position: 4-549
Cow position:
Alignm length: 558
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 194

Conread position: 5-419
Cow position:
Alignm length: 419
Alignm identity: 269
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 182, 89

Conread position: 5-511
Cow position:
Alignm length: 531
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 101

Conread position: 8-431
Cow position:
Alignm length: 428
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-437
Cow position:
Alignm length: 433
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-437
Cow position:
Alignm length: 433
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 183

Conread position: 8-444
Cow position:
Alignm length: 440
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 117

Conread position: 8-463
Cow position:
Alignm length: 460
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-463
Cow position:
Alignm length: 460
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-463
Cow position:
Alignm length: 467
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 177

Conread position: 8-476
Cow position:
Alignm length: 474
Alignm identity: 301
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 216, 115

Conread position: 9-386
Cow position:
Alignm length: 380
Alignm identity: 249
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 157, 78

Conread position: 9-457
Cow position:
Alignm length: 452
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 31

Conread position: 9-462
Cow position:
Alignm length: 458
Alignm identity: 292
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 69, 35

Conread position: 11-436
Cow position:
Alignm length: 430
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 187

Conread position: 12-437
Cow position:
Alignm length: 429
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 110

Conread position: 15-520
Cow position:
Alignm length: 514
Alignm identity: 327
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 81, 47

Conread position: 29-588
Cow position:
Alignm length: 564
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 96

Conread position: 49-495
Cow position:
Alignm length: 456
Alignm identity: 292
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 175, 55

Conread position: 49-508
Cow position:
Alignm length: 463
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 86

Conread position: 49-520
Cow position:
Alignm length: 476
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 72

Conread position: 50-411
Cow position:
Alignm length: 370
Alignm identity: 250
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 126, 110

Conread position: 52-440
Cow position:
Alignm length: 399
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 112

Conread position: 64-404
Cow position:
Alignm length: 344
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 109

Conread position: 65-463
Cow position:
Alignm length: 403
Alignm identity: 272
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 32, 23

Conread position: 65-508
Cow position:
Alignm length: 448
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 133

Conread position: 77-419
Cow position:
Alignm length: 347
Alignm identity: 226
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 149, 122

Conread position: 84-435
Cow position:
Alignm length: 360
Alignm identity: 225
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 150, 36

Conread position: 92-433
Cow position:
Alignm length: 346
Alignm identity: 239
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 137, 83

Conread position: 104-459
Cow position:
Alignm length: 362
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 31

Conread position: 104-576
Cow position:
Alignm length: 477
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 39

Conread position: 115-514
Cow position:
Alignm length: 408
Alignm identity: 281
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 17, 52

Conread position: 137-457
Cow position:
Alignm length: 327
Alignm identity: 230
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 36, 63

Conread position: 144-343
Cow position:
Alignm length: 201
Alignm identity: 147
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 82, 24

Conread position: 164-514
Cow position:
Alignm length: 353
Alignm identity: 237
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 67, 34

Conread position: 168-437
Cow position:
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 32

Conread position: 171-436
Cow position:
Alignm length: 271
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 27

Conread position: 184-411
Cow position:
Alignm length: 231
Alignm identity: 166
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 38, 83

Conread position: 190-520
Cow position:
Alignm length: 336
Alignm identity: 234
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 34, 8

Conread position: 195-436
Cow position:
Alignm length: 245
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 74

Conread position: 199-427
Cow position:
Alignm length: 232
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 68

Conread position: 199-578
Cow position:
Alignm length: 383
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 68

Conread position: 204-431
Cow position:
Alignm length: 231
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 63

Conread position: 223-508
Cow position:
Alignm length: 289
Alignm identity: 207
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 61, 42

Conread position: 223-588
Cow position:
Alignm length: 367
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 44

Conread position: 230-434
Cow position:
Alignm length: 209
Alignm identity: 143
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 87, 36

Conread position: 262-578
Cow position:
Alignm length: 320
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 204

Conread position: 287-437
Cow position:
Alignm length: 151
Alignm identity: 117
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 77, 0

Conread position: 293-457
Cow position:
Alignm length: 167
Alignm identity: 126
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 22, 14

Conread position: 300-525
Cow position:
Alignm length: 232
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Show alignments to all cow chromosomes.