Cow genome map

Conread name: Ss1.1-rplun0138_i19.5

Conread position: 1-155
Cow position:
Alignm length: 155
Alignm identity: 129
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 61, 0

Conread position: 1-185
Cow position:
Alignm length: 185
Alignm identity: 139
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 160, 0

Conread position: 1-191
Cow position:
Alignm length: 193
Alignm identity: 131
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 184, 0

Conread position: 1-249
Cow position:
Alignm length: 253
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 0

Conread position: 1-251
Cow position:
Alignm length: 251
Alignm identity: 179
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 61, 0

Conread position: 1-325
Cow position:
Alignm length: 328
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 119

Conread position: 1-335
Cow position:
Alignm length: 337
Alignm identity: 229
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 225, 103

Conread position: 1-397
Cow position:
Alignm length: 400
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 132

Conread position: 1-407
Cow position:
Alignm length: 409
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 41

Conread position: 1-423
Cow position:
Alignm length: 426
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 130

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 431
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 198

Conread position: 1-427
Cow position:
Alignm length: 440
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 186

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 67

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 61

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 138

Conread position: 1-427
Cow position:
Alignm length: 431
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 184

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-431
Cow position:
Alignm length: 435
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 197

Conread position: 1-434
Cow position:
Alignm length: 437
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 162

Conread position: 1-436
Cow position:
Alignm length: 449
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 147

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 160

Conread position: 1-436
Cow position:
Alignm length: 438
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 151

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 103

Conread position: 1-437
Cow position:
Alignm length: 458
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 284

Conread position: 1-437
Cow position:
Alignm length: 440
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 56

Conread position: 1-437
Cow position:
Alignm length: 445
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 12

Conread position: 1-447
Cow position:
Alignm length: 455
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-455
Cow position:
Alignm length: 461
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-505
Cow position:
Alignm length: 515
Alignm identity: 336
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 39, 12

Conread position: 1-506
Cow position:
Alignm length: 511
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 20

Conread position: 1-520
Cow position:
Alignm length: 525
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 62

Conread position: 1-521
Cow position:
Alignm length: 524
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 71

Conread position: 1-575
Cow position:
Alignm length: 580
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 111

Conread position: 1-576
Cow position:
Alignm length: 583
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 32

Conread position: 1-578
Cow position:
Alignm length: 585
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 136

Conread position: 1-588
Cow position:
Alignm length: 589
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 433, 43

Conread position: 1-588
Cow position:
Alignm length: 609
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 96

Conread position: 2-169
Cow position:
Alignm length: 168
Alignm identity: 129
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 2-358
Cow position:
Alignm length: 360
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 60

Conread position: 2-363
Cow position:
Alignm length: 365
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 119

Conread position: 2-370
Cow position:
Alignm length: 372
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 120

Conread position: 2-378
Cow position:
Alignm length: 377
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 0

Conread position: 2-387
Cow position:
Alignm length: 392
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 132

Conread position: 2-389
Cow position:
Alignm length: 392
Alignm identity: 270
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 49, 24

Conread position: 2-395
Cow position:
Alignm length: 399
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 34

Conread position: 2-402
Cow position:
Alignm length: 404
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 60

Conread position: 2-410
Cow position:
Alignm length: 412
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-426
Cow position:
Alignm length: 429
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-426
Cow position:
Alignm length: 428
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 120

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 123

Conread position: 2-437
Cow position:
Alignm length: 439
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-437
Cow position:
Alignm length: 440
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-437
Cow position:
Alignm length: 440
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 198

Conread position: 2-437
Cow position:
Alignm length: 439
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 66

Conread position: 2-444
Cow position:
Alignm length: 446
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 97

Conread position: 2-457
Cow position:
Alignm length: 462
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 42

Conread position: 2-460
Cow position:
Alignm length: 465
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 34

Conread position: 2-460
Cow position:
Alignm length: 463
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position:
Alignm length: 467
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 89

Conread position: 2-463
Cow position:
Alignm length: 468
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 82

Conread position: 2-463
Cow position:
Alignm length: 468
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 193

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position:
Alignm length: 464
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 169

Conread position: 2-466
Cow position:
Alignm length: 468
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 76

Conread position: 2-505
Cow position:
Alignm length: 519
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 134

Conread position: 4-336
Cow position:
Alignm length: 337
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 42

Conread position: 4-454
Cow position:
Alignm length: 459
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 32

Conread position: 8-263
Cow position:
Alignm length: 259
Alignm identity: 188
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 181, 54

Conread position: 8-407
Cow position:
Alignm length: 403
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-422
Cow position:
Alignm length: 421
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 54

Conread position: 8-431
Cow position:
Alignm length: 427
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-431
Cow position:
Alignm length: 427
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 13

Conread position: 8-436
Cow position:
Alignm length: 432
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 190

Conread position: 8-453
Cow position:
Alignm length: 448
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 18

Conread position: 8-463
Cow position:
Alignm length: 459
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-463
Cow position:
Alignm length: 461
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 114

Conread position: 8-463
Cow position:
Alignm length: 459
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-588
Cow position:
Alignm length: 582
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 54

Conread position: 9-164
Cow position:
Alignm length: 156
Alignm identity: 123
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 50, 0

Conread position: 9-431
Cow position:
Alignm length: 428
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 189

Conread position: 9-456
Cow position:
Alignm length: 454
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 53

Conread position: 9-457
Cow position:
Alignm length: 468
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 132

Conread position: 11-146
Cow position:
Alignm length: 136
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 13-458
Cow position:
Alignm length: 449
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 185

Conread position: 14-157
Cow position:
Alignm length: 144
Alignm identity: 108
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 17-427
Cow position:
Alignm length: 412
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 45

Conread position: 22-576
Cow position:
Alignm length: 560
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 102

Conread position: 43-497
Cow position:
Alignm length: 463
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 80

Conread position: 44-303
Cow position:
Alignm length: 267
Alignm identity: 174
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 102, 145

Conread position: 44-404
Cow position:
Alignm length: 375
Alignm identity: 240
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 180, 43

Conread position: 51-520
Cow position:
Alignm length: 476
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 53

Conread position: 52-422
Cow position:
Alignm length: 376
Alignm identity: 254
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 114, 73

Conread position: 54-363
Cow position:
Alignm length: 326
Alignm identity: 214
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 140, 57

Conread position: 58-427
Cow position:
Alignm length: 373
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 140

Conread position: 68-432
Cow position:
Alignm length: 367
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 130

Conread position: 82-525
Cow position:
Alignm length: 453
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 23

Conread position: 92-431
Cow position:
Alignm length: 352
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 106

Conread position: 92-444
Cow position:
Alignm length: 357
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 106

Conread position: 92-459
Cow position:
Alignm length: 378
Alignm identity: 254
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 69, 33

Conread position: 101-427
Cow position:
Alignm length: 333
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 98

Conread position: 106-458
Cow position:
Alignm length: 363
Alignm identity: 231
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 78

Conread position: 117-525
Cow position:
Alignm length: 414
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 81

Conread position: 124-421
Cow position:
Alignm length: 302
Alignm identity: 215
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 100, 24

Conread position: 126-372
Cow position:
Alignm length: 251
Alignm identity: 168
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 45, 58

Conread position: 131-517
Cow position:
Alignm length: 393
Alignm identity: 258
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 12, 31

Conread position: 133-412
Cow position:
Alignm length: 285
Alignm identity: 188
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 35, 14

Conread position: 152-463
Cow position:
Alignm length: 316
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 13

Conread position: 153-525
Cow position:
Alignm length: 377
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 45

Conread position: 157-437
Cow position:
Alignm length: 285
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 21

Conread position: 161-431
Cow position:
Alignm length: 274
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 37

Conread position: 174-508
Cow position:
Alignm length: 344
Alignm identity: 235
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 50, 23

Conread position: 183-500
Cow position:
Alignm length: 323
Alignm identity: 218
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 84, 15

Conread position: 223-436
Cow position:
Alignm length: 214
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 223-460
Cow position:
Alignm length: 241
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 37

Conread position: 241-458
Cow position:
Alignm length: 228
Alignm identity: 158
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 17, 62

Conread position: 247-525
Cow position:
Alignm length: 281
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 18

Conread position: 268-437
Cow position:
Alignm length: 171
Alignm identity: 137
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 47, 0

Conread position: 272-525
Cow position:
Alignm length: 255
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 7

Conread position: 273-457
Cow position:
Alignm length: 188
Alignm identity: 140
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 42, 79

Conread position: 280-427
Cow position:
Alignm length: 150
Alignm identity: 126
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 35, 0

Conread position: 287-436
Cow position:
Alignm length: 151
Alignm identity: 123
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 28, 0

Conread position: 292-578
Cow position:
Alignm length: 289
Alignm identity: 204
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 21, 140

Conread position: 331-436
Cow position:
Alignm length: 106
Alignm identity: 90
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.