Cow genome map

Conread name: Ss1.1-rplun0138_i19.5

Conread position: 1-146
Cow position:
Alignm length: 146
Alignm identity: 111
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-172
Cow position:
Alignm length: 175
Alignm identity: 135
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 95, 0

Conread position: 1-179
Cow position:
Alignm length: 179
Alignm identity: 136
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 61, 0

Conread position: 1-207
Cow position:
Alignm length: 208
Alignm identity: 158
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 27, 198

Conread position: 1-227
Cow position:
Alignm length: 227
Alignm identity: 163
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 131, 0

Conread position: 1-263
Cow position:
Alignm length: 265
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-332
Cow position:
Alignm length: 335
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 137

Conread position: 1-367
Cow position:
Alignm length: 370
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-372
Cow position:
Alignm length: 379
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 97

Conread position: 1-372
Cow position:
Alignm length: 375
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 73

Conread position: 1-404
Cow position:
Alignm length: 405
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 44

Conread position: 1-410
Cow position:
Alignm length: 414
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 19

Conread position: 1-413
Cow position:
Alignm length: 421
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 59

Conread position: 1-423
Cow position:
Alignm length: 427
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 119

Conread position: 1-427
Cow position:
Alignm length: 436
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 8

Conread position: 1-427
Cow position:
Alignm length: 431
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 28

Conread position: 1-427
Cow position:
Alignm length: 431
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 192

Conread position: 1-427
Cow position:
Alignm length: 443
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 197

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 160

Conread position: 1-427
Cow position:
Alignm length: 430
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-428
Cow position:
Alignm length: 441
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 207

Conread position: 1-434
Cow position:
Alignm length: 437
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 173

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 23

Conread position: 1-436
Cow position:
Alignm length: 439
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-436
Cow position:
Alignm length: 440
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 198

Conread position: 1-437
Cow position:
Alignm length: 442
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-437
Cow position:
Alignm length: 444
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 199

Conread position: 1-437
Cow position:
Alignm length: 440
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 161

Conread position: 1-437
Cow position:
Alignm length: 442
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 62

Conread position: 1-440
Cow position:
Alignm length: 446
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 161

Conread position: 1-447
Cow position:
Alignm length: 451
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 139

Conread position: 1-451
Cow position:
Alignm length: 466
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 61

Conread position: 1-454
Cow position:
Alignm length: 472
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 210

Conread position: 1-457
Cow position:
Alignm length: 460
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 160

Conread position: 1-457
Cow position:
Alignm length: 474
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 61

Conread position: 1-488
Cow position:
Alignm length: 492
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 74

Conread position: 1-508
Cow position:
Alignm length: 513
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 52

Conread position: 1-524
Cow position:
Alignm length: 529
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 149

Conread position: 1-525
Cow position:
Alignm length: 531
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 79

Conread position: 2-129
Cow position:
Alignm length: 128
Alignm identity: 98
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 2-305
Cow position:
Alignm length: 306
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 52

Conread position: 2-377
Cow position:
Alignm length: 382
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 197

Conread position: 2-397
Cow position:
Alignm length: 399
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 265

Conread position: 2-410
Cow position:
Alignm length: 412
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 19

Conread position: 2-416
Cow position:
Alignm length: 419
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 138

Conread position: 2-417
Cow position:
Alignm length: 419
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 26

Conread position: 2-426
Cow position:
Alignm length: 428
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 19

Conread position: 2-431
Cow position:
Alignm length: 431
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 19

Conread position: 2-431
Cow position:
Alignm length: 431
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 141

Conread position: 2-431
Cow position:
Alignm length: 434
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 12

Conread position: 2-431
Cow position:
Alignm length: 433
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-434
Cow position:
Alignm length: 437
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 197

Conread position: 2-436
Cow position:
Alignm length: 438
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-436
Cow position:
Alignm length: 438
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-437
Cow position:
Alignm length: 439
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 60

Conread position: 2-437
Cow position:
Alignm length: 441
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 147

Conread position: 2-438
Cow position:
Alignm length: 446
Alignm identity: 299
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 222, 107

Conread position: 2-460
Cow position:
Alignm length: 465
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 199

Conread position: 2-462
Cow position:
Alignm length: 464
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position:
Alignm length: 467
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 141

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 60

Conread position: 2-463
Cow position:
Alignm length: 467
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 82

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 34

Conread position: 2-463
Cow position:
Alignm length: 466
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 176

Conread position: 2-465
Cow position:
Alignm length: 468
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 197

Conread position: 3-384
Cow position:
Alignm length: 397
Alignm identity: 267
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 32, 37

Conread position: 5-435
Cow position:
Alignm length: 443
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 125

Conread position: 5-505
Cow position:
Alignm length: 502
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 28

Conread position: 8-164
Cow position:
Alignm length: 157
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 114, 0

Conread position: 8-245
Cow position:
Alignm length: 240
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 46

Conread position: 8-342
Cow position:
Alignm length: 340
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 191

Conread position: 8-415
Cow position:
Alignm length: 410
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 11

Conread position: 8-434
Cow position:
Alignm length: 437
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 129

Conread position: 8-455
Cow position:
Alignm length: 458
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 135

Conread position: 8-460
Cow position:
Alignm length: 457
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 99

Conread position: 8-462
Cow position:
Alignm length: 459
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 126

Conread position: 8-463
Cow position:
Alignm length: 460
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-508
Cow position:
Alignm length: 505
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 30

Conread position: 9-435
Cow position:
Alignm length: 430
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 189

Conread position: 9-436
Cow position:
Alignm length: 434
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 28

Conread position: 9-457
Cow position:
Alignm length: 454
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 190

Conread position: 9-495
Cow position:
Alignm length: 490
Alignm identity: 313
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 100, 114

Conread position: 10-162
Cow position:
Alignm length: 153
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 10-251
Cow position:
Alignm length: 244
Alignm identity: 176
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 214, 53

Conread position: 10-416
Cow position:
Alignm length: 411
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 151

Conread position: 10-431
Cow position:
Alignm length: 425
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 188

Conread position: 14-438
Cow position:
Alignm length: 431
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 184

Conread position: 23-391
Cow position:
Alignm length: 373
Alignm identity: 255
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 155, 8

Conread position: 27-281
Cow position:
Alignm length: 257
Alignm identity: 173
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 195, 105

Conread position: 28-576
Cow position:
Alignm length: 556
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 120

Conread position: 50-451
Cow position:
Alignm length: 422
Alignm identity: 263
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 65, 236

Conread position: 68-427
Cow position:
Alignm length: 363
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 130

Conread position: 72-383
Cow position:
Alignm length: 317
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 70

Conread position: 75-444
Cow position:
Alignm length: 377
Alignm identity: 256
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 149, 28

Conread position: 88-459
Cow position:
Alignm length: 377
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 111

Conread position: 100-520
Cow position:
Alignm length: 427
Alignm identity: 283
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 126, 12

Conread position: 122-463
Cow position:
Alignm length: 347
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 76

Conread position: 125-263
Cow position:
Alignm length: 141
Alignm identity: 106
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 99, 73

Conread position: 126-437
Cow position:
Alignm length: 315
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 72

Conread position: 130-447
Cow position:
Alignm length: 323
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 70

Conread position: 137-366
Cow position:
Alignm length: 234
Alignm identity: 163
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 87, 24

Conread position: 137-416
Cow position:
Alignm length: 284
Alignm identity: 209
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 87, 12

Conread position: 146-460
Cow position:
Alignm length: 318
Alignm identity: 215
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 76, 52

Conread position: 162-354
Cow position:
Alignm length: 199
Alignm identity: 150
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 62, 36

Conread position: 166-436
Cow position:
Alignm length: 274
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 32

Conread position: 166-507
Cow position:
Alignm length: 346
Alignm identity: 228
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 60, 32

Conread position: 181-392
Cow position:
Alignm length: 215
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 17

Conread position: 182-431
Cow position:
Alignm length: 252
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 17

Conread position: 195-432
Cow position:
Alignm length: 238
Alignm identity: 159
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 70, 0

Conread position: 198-436
Cow position:
Alignm length: 242
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 69

Conread position: 199-521
Cow position:
Alignm length: 333
Alignm identity: 227
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 22, 34

Conread position: 229-447
Cow position:
Alignm length: 221
Alignm identity: 169
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 86, 36

Conread position: 229-580
Cow position:
Alignm length: 353
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 37

Conread position: 232-436
Cow position:
Alignm length: 206
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 35

Conread position: 237-520
Cow position:
Alignm length: 285
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 28

Conread position: 249-436
Cow position:
Alignm length: 189
Alignm identity: 148
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 68, 16

Conread position: 255-437
Cow position:
Alignm length: 184
Alignm identity: 139
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 59, 10

Conread position: 265-427
Cow position:
Alignm length: 165
Alignm identity: 130
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 21, 0

Conread position: 273-416
Cow position:
Alignm length: 146
Alignm identity: 115
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 42, 0

Conread position: 273-437
Cow position:
Alignm length: 166
Alignm identity: 125
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 42, 0

Conread position: 277-427
Cow position:
Alignm length: 151
Alignm identity: 85
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 295-513
Cow position:
Alignm length: 220
Alignm identity: 157
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 19, 5

Conread position: 388-588
Cow position:
Alignm length: 202
Alignm identity: 141
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 192, 46

Show alignments to all cow chromosomes.