Cow genome map

Conread name: Ss1.1-rplun0138_i19.5

Conread position: 1-126
Cow position: chrX:25332721-25332846 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-172
Cow position: chrX:34988513-34988681 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 1-185
Cow position: chrX:30046485-30046300 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 142, 0

Conread position: 1-190
Cow position: chrX:24325513-24325323 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 165, 0

Conread position: 1-190
Cow position: chrX:39717429-39717619 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 149
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 42, 0

Conread position: 1-206
Cow position: chrX:8963426-8963224 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 13, 0

Conread position: 1-220
Cow position: chrX:3421807-3421591 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 161
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 81, 0

Conread position: 1-240
Cow position: chrX:35020618-35020857 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 171
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 152, 43

Conread position: 1-242
Cow position: chrX:24380943-24381184 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 146
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 1-246
Cow position: chrX:12341830-12342071 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 177
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 222, 44

Conread position: 1-251
Cow position: chrX:4795550-4795810 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 177
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 127, 208

Conread position: 1-282
Cow position: chrX:22131064-22130793 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 197
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 223, 27

Conread position: 1-300
Cow position: chrX:30666306-30666008 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 160

Conread position: 1-341
Cow position: chrX:11668809-11668469 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 177

Conread position: 1-347
Cow position: chrX:3085269-3084923 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-347
Cow position: chrX:12289309-12288957 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-386
Cow position: chrX:21794731-21795113 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 84

Conread position: 1-392
Cow position: chrX:2860169-2859777 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 198

Conread position: 1-392
Cow position: chrX:5395330-5394938 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 58

Conread position: 1-392
Cow position: chrX:26400835-26400445 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 197

Conread position: 1-410
Cow position: chrX:12997929-12997537 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 61

Conread position: 1-422
Cow position: chrX:6873437-6873019 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 58

Conread position: 1-423
Cow position: chrX:17614769-17614362 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 280
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 225, 53

Conread position: 1-427
Cow position: chrX:2101491-2101918 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position: chrX:2563225-2562798 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position: chrX:2603681-2604107 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position: chrX:7029823-7030247 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 58

Conread position: 1-427
Cow position: chrX:7093231-7093657 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 124

Conread position: 1-427
Cow position: chrX:7751531-7751959 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 197

Conread position: 1-427
Cow position: chrX:8586726-8587153 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position: chrX:9007974-9008397 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 160

Conread position: 1-427
Cow position: chrX:10531926-10531499 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position: chrX:11465369-11464943 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 1-427
Cow position: chrX:12280623-12280211 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 140

Conread position: 1-427
Cow position: chrX:12655121-12654701 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 61

Conread position: 1-427
Cow position: chrX:13077062-13076638 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 98

Conread position: 1-427
Cow position: chrX:13097636-13097212 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 98

Conread position: 1-427
Cow position: chrX:14787240-14786813 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position: chrX:15179797-15179372 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 103

Conread position: 1-427
Cow position: chrX:16275309-16275736 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 197

Conread position: 1-427
Cow position: chrX:18219029-18219456 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position: chrX:20316423-20315996 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 197

Conread position: 1-427
Cow position: chrX:22525972-22525545 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position: chrX:22619682-22619249 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 202

Conread position: 1-427
Cow position: chrX:22777944-22778371 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position: chrX:26504823-26505243 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 61

Conread position: 1-427
Cow position: chrX:27426684-27426261 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position: chrX:28634783-28634357 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 124

Conread position: 1-427
Cow position: chrX:28758993-28758582 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 61

Conread position: 1-427
Cow position: chrX:35529492-35529921 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-427
Cow position: chrX:37848647-37849073 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 42

Conread position: 1-431
Cow position: chrX:12804230-12803802 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 148

Conread position: 1-431
Cow position: chrX:13398484-13398057 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-431
Cow position: chrX:24089035-24089464 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 67

Conread position: 1-435
Cow position: chrX:5324091-5323656 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 197

Conread position: 1-435
Cow position: chrX:9124991-9125426 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-435
Cow position: chrX:21340033-21340471 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 84

Conread position: 1-435
Cow position: chrX:21656772-21657199 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 282
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 36, 17

Conread position: 1-436
Cow position: chrX:5284102-5283666 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-436
Cow position: chrX:7481236-7481671 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 58

Conread position: 1-436
Cow position: chrX:8454388-8454820 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 35

Conread position: 1-436
Cow position: chrX:8670225-8670659 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 124

Conread position: 1-436
Cow position: chrX:9193012-9192576 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-436
Cow position: chrX:16363490-16363056 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 61

Conread position: 1-436
Cow position: chrX:17478893-17478454 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 198

Conread position: 1-436
Cow position: chrX:18660150-18659715 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 197

Conread position: 1-436
Cow position: chrX:21304907-21304458 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 210

Conread position: 1-436
Cow position: chrX:23046778-23047212 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-436
Cow position: chrX:39521539-39521975 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-436
Cow position: chrX:41411389-41410953 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-437
Cow position: chrX:6275961-6275548 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 0

Conread position: 1-437
Cow position: chrX:6909702-6909277 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 61

Conread position: 1-437
Cow position: chrX:13007001-13006556 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 205

Conread position: 1-437
Cow position: chrX:20803760-20804196 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 61

Conread position: 1-437
Cow position: chrX:24122285-24121851 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 119

Conread position: 1-437
Cow position: chrX:24136762-24136336 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 94

Conread position: 1-437
Cow position: chrX:24275305-24275739 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 124

Conread position: 1-437
Cow position: chrX:28562581-28562146 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 97

Conread position: 1-437
Cow position: chrX:35017447-35017878 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 13

Conread position: 1-454
Cow position: chrX:2537139-2536696 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 197

Conread position: 1-455
Cow position: chrX:40057432-40056980 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 187

Conread position: 1-457
Cow position: chrX:1833460-1833921 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-460
Cow position: chrX:30174030-30173580 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 142

Conread position: 1-462
Cow position: chrX:5863030-5863491 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 197

Conread position: 1-463
Cow position: chrX:23391969-23391503 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 199

Conread position: 1-475
Cow position: chrX:5839970-5840438 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 38

Conread position: 1-504
Cow position: chrX:30369368-30368882 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 20

Conread position: 1-520
Cow position: chrX:17668654-17668152 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 160

Conread position: 1-520
Cow position: chrX:21270551-21270046 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 339
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 225, 61

Conread position: 1-524
Cow position: chrX:18532632-18533144 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 38

Conread position: 1-560
Cow position: chrX:6283448-6282888 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 20

Conread position: 1-588
Cow position: chrX:30142756-30142187 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 98

Conread position: 2-143
Cow position: chrX:5834536-5834396 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 80, 0

Conread position: 2-175
Cow position: chrX:16935922-16935751 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 60, 0

Conread position: 2-326
Cow position: chrX:16236946-16237267 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 60

Conread position: 2-365
Cow position: chrX:8479338-8479697 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 138

Conread position: 2-365
Cow position: chrX:21489864-21490226 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 196

Conread position: 2-392
Cow position: chrX:32095329-32094939 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 141

Conread position: 2-399
Cow position: chrX:29853930-29853535 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 164

Conread position: 2-409
Cow position: chrX:13413482-13413075 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 195

Conread position: 2-411
Cow position: chrX:19927950-19928334 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 274
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 62, 90

Conread position: 2-423
Cow position: chrX:1546568-1546990 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-423
Cow position: chrX:2483005-2482583 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position: chrX:15127608-15127180 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position: chrX:15598563-15598992 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-431
Cow position: chrX:22487822-22488243 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 106

Conread position: 2-431
Cow position: chrX:26758957-26758543 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 106

Conread position: 2-431
Cow position: chrX:26767562-26767136 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 34

Conread position: 2-431
Cow position: chrX:30232470-30232046 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 80

Conread position: 2-436
Cow position: chrX:6015825-6015394 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 71

Conread position: 2-437
Cow position: chrX:21602522-21602948 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 11

Conread position: 2-437
Cow position: chrX:21632950-21632518 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 176

Conread position: 2-437
Cow position: chrX:27494341-27494779 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 191

Conread position: 2-440
Cow position: chrX:23018963-23019396 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 44

Conread position: 2-445
Cow position: chrX:12478355-12478797 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 61

Conread position: 2-451
Cow position: chrX:23455937-23455498 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 34

Conread position: 2-456
Cow position: chrX:22814020-22814470 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 69

Conread position: 2-456
Cow position: chrX:29285067-29285499 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 123

Conread position: 2-457
Cow position: chrX:970399-970858 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-457
Cow position: chrX:24484777-24484322 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 174

Conread position: 2-457
Cow position: chrX:27990146-27989690 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 114

Conread position: 2-458
Cow position: chrX:29950940-29950488 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 66

Conread position: 2-463
Cow position: chrX:20796239-20796705 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 310
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 166, 37

Conread position: 2-463
Cow position: chrX:21222561-21223024 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 196

Conread position: 2-463
Cow position: chrX:23041482-23041027 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 97

Conread position: 2-463
Cow position: chrX:30184260-30183798 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 147

Conread position: 2-463
Cow position: chrX:30710987-30711445 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 159

Conread position: 3-201
Cow position: chrX:13052302-13052495 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 41, 0

Conread position: 3-427
Cow position: chrX:31187599-31187186 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 60

Conread position: 3-447
Cow position: chrX:21289857-21289411 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 196

Conread position: 3-527
Cow position: chrX:20698636-20698141 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 40

Conread position: 8-181
Cow position: chrX:30056311-30056481 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 162, 15

Conread position: 8-387
Cow position: chrX:22893730-22893350 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 191

Conread position: 8-416
Cow position: chrX:21829163-21829573 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-422
Cow position: chrX:17632183-17631775 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 8

Conread position: 8-427
Cow position: chrX:29947343-29947766 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 193

Conread position: 8-431
Cow position: chrX:26527615-26528038 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 8-433
Cow position: chrX:40247675-40247251 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 54

Conread position: 8-437
Cow position: chrX:320110-320536 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 48

Conread position: 8-457
Cow position: chrX:29872920-29872475 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 190

Conread position: 8-463
Cow position: chrX:16698941-16699396 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 12

Conread position: 8-463
Cow position: chrX:32466891-32467347 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 190

Conread position: 9-427
Cow position: chrX:39564289-39563872 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 53

Conread position: 9-431
Cow position: chrX:22583060-22582636 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 189

Conread position: 9-575
Cow position: chrX:16017497-16016919 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 51

Conread position: 14-457
Cow position: chrX:30179347-30178904 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 73

Conread position: 23-431
Cow position: chrX:12670206-12669802 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 28

Conread position: 23-437
Cow position: chrX:28603801-28603390 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 110

Conread position: 28-437
Cow position: chrX:29794454-29794047 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 115

Conread position: 29-459
Cow position: chrX:28875750-28875328 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 292
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 193, 75

Conread position: 44-427
Cow position: chrX:37811837-37812221 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 154

Conread position: 45-504
Cow position: chrX:17886338-17886796 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 299
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 5, 16

Conread position: 49-410
Cow position: chrX:29882550-29882188 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 243
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 144, 127

Conread position: 49-463
Cow position: chrX:18954842-18954429 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 149

Conread position: 53-435
Cow position: chrX:1697177-1696803 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 253
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 113, 15

Conread position: 54-427
Cow position: chrX:1943358-1942985 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 89

Conread position: 55-437
Cow position: chrX:5299529-5299154 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 88

Conread position: 63-305
Cow position: chrX:21586861-21587101 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 80

Conread position: 63-436
Cow position: chrX:982332-982706 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 135

Conread position: 63-437
Cow position: chrX:26628338-26627963 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 135

Conread position: 68-525
Cow position: chrX:12973532-12973075 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 132

Conread position: 72-559
Cow position: chrX:44386176-44386660 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 17

Conread position: 74-395
Cow position: chrX:2787526-2787203 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 227
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 104, 51

Conread position: 77-521
Cow position: chrX:2142993-2143433 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 46

Conread position: 78-436
Cow position: chrX:31192093-31191742 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 251
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 144, 102

Conread position: 80-434
Cow position: chrX:25564674-25564318 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 249
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 50, 32

Conread position: 80-460
Cow position: chrX:26428336-26427954 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 262
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 88, 102

Conread position: 89-427
Cow position: chrX:28584700-28585039 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 109

Conread position: 94-346
Cow position: chrX:5336743-5336491 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 104

Conread position: 94-419
Cow position: chrX:35390368-35390046 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 103

Conread position: 98-437
Cow position: chrX:16461406-16461739 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 100

Conread position: 101-437
Cow position: chrX:22514422-22514088 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 222
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 123, 62

Conread position: 101-443
Cow position: chrX:26421431-26421762 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 227
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 122, 60

Conread position: 104-474
Cow position: chrX:34988632-34989002 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 95

Conread position: 105-506
Cow position: chrX:30133101-30132700 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 278
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 38, 7

Conread position: 112-463
Cow position: chrX:38146048-38146401 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 86

Conread position: 114-431
Cow position: chrX:18135422-18135109 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 202
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 173, 47

Conread position: 118-422
Cow position: chrX:29757908-29758215 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 81

Conread position: 121-396
Cow position: chrX:5834212-5833936 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 77

Conread position: 131-459
Cow position: chrX:3398083-3397757 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 225
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 93, 66

Conread position: 134-365
Cow position: chrX:17250563-17250334 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 90, 16

Conread position: 136-444
Cow position: chrX:15232133-15232436 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 202
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 88, 61

Conread position: 145-433
Cow position: chrX:29998569-29998852 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 205
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 79, 45

Conread position: 153-414
Cow position: chrX:38576039-38575775 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 113

Conread position: 153-588
Cow position: chrX:31724809-31725245 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 46

Conread position: 156-412
Cow position: chrX:11663718-11663461 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 43

Conread position: 164-437
Cow position: chrX:30056437-30056714 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 204
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 19, 10

Conread position: 166-525
Cow position: chrX:28549658-28550021 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 90

Conread position: 170-497
Cow position: chrX:24114386-24114060 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 227
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 54, 28

Conread position: 178-437
Cow position: chrX:39719246-39719509 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 20

Conread position: 185-508
Cow position: chrX:24139210-24138887 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 227
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 41, 13

Conread position: 195-437
Cow position: chrX:30044320-30044076 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 72

Conread position: 198-427
Cow position: chrX:31493252-31493479 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 26

Conread position: 200-434
Cow position: chrX:10418120-10417891 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 168
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 20, 61

Conread position: 205-424
Cow position: chrX:47457863-47457641 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 19, 102

Conread position: 223-427
Cow position: chrX:12353095-12353299 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 42

Conread position: 223-427
Cow position: chrX:17050948-17051154 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 42

Conread position: 231-558
Cow position: chrX:35021128-35021453 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 34

Conread position: 233-520
Cow position: chrX:13052497-13052777 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 198
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 32, 0

Conread position: 234-452
Cow position: chrX:16812727-16812512 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 168
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 81, 31

Conread position: 236-463
Cow position: chrX:23276890-23277115 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 171
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 79, 29

Conread position: 247-432
Cow position: chrX:37142711-37142527 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 148
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 67, 18

Conread position: 248-436
Cow position: chrX:11433581-11433769 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 153
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 67, 17

Conread position: 250-395
Cow position: chrX:3421580-3421436 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 63, 15

Conread position: 256-525
Cow position: chrX:22130792-22130521 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 189
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 58, 9

Conread position: 258-431
Cow position: chrX:20360161-20359988 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 143
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 57, 7

Conread position: 266-457
Cow position: chrX:30010936-30011127 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 150
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 49, 164

Conread position: 281-436
Cow position: chrX:30055824-30055668 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 130
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 34, 0

Conread position: 286-416
Cow position: chrX:14594672-14594803 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 29, 0

Conread position: 288-427
Cow position: chrX:41851480-41851340 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 117
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 27, 0

Conread position: 291-437
Cow position: chrX:4795811-4795960 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 298-447
Cow position: chrX:30990020-30990171 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 122
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 16, 134

Conread position: 298-578
Cow position: chrX:21587120-21587405 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 170

Conread position: 299-457
Cow position: chrX:29884910-29885074 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 316-427
Cow position: chrX:3376160-3376049 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 96
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.