Cow genome map
| Conread name: | Ss1.1-rptbr0110_c10.5 |
| Conread position: | 163-451 |
| Cow position: | chr10:23409014-23409302 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 166-520 |
| Cow position: | chr10:57987778-57988139 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 241 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 67, 15 |
| Conread position: | 173-450 |
| Cow position: | chr10:41386763-41387037 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 15, 42 |
| Conread position: | 173-462 |
| Cow position: | chr10:6844291-6844585 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 41 |
| Conread position: | 174-457 |
| Cow position: | chr10:39937557-39937847 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 17 |
| Conread position: | 174-462 |
| Cow position: | chr10:48878203-48878503 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 90 |
| Conread position: | 174-504 |
| Cow position: | chr10:36428455-36428796 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 59, 152 |
| Conread position: | 174-523 |
| Cow position: | chr10:36513496-36513134 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 59, 157 |
| Conread position: | 176-382 |
| Cow position: | chr10:57479434-57479639 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 62, 32 |
| Conread position: | 176-528 |
| Cow position: | chr10:41773400-41773758 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 57, 150 |
| Conread position: | 179-451 |
| Cow position: | chr10:14845261-14844989 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 54, 142 |
| Conread position: | 179-528 |
| Cow position: | chr10:55286001-55285646 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 56, 14 |
| Conread position: | 180-453 |
| Cow position: | chr10:29630044-29630316 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 53, 121 |
| Conread position: | 181-420 |
| Cow position: | chr10:1369365-1369121 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 52, 145 |
| Conread position: | 181-420 |
| Cow position: | chr10:8292345-8292101 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 5, 129 |
| Conread position: | 181-451 |
| Cow position: | chr10:2118812-2119085 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 5, 129 |
| Conread position: | 181-520 |
| Cow position: | chr10:19142396-19142744 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-520 |
| Cow position: | chr10:22103452-22103102 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-520 |
| Cow position: | chr10:38343156-38343494 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-520 |
| Cow position: | chr10:38842378-38842033 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 57, 145 |
| Conread position: | 181-522 |
| Cow position: | chr10:10584359-10584008 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 15, 131 |
| Conread position: | 181-525 |
| Cow position: | chr10:42642805-42642460 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 235 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 15, 128 |
| Conread position: | 182-421 |
| Cow position: | chr10:25564340-25564581 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 16 |
| Conread position: | 182-432 |
| Cow position: | chr10:31022683-31022937 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-451 |
| Cow position: | chr10:5868342-5868614 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-507 |
| Cow position: | chr10:22343682-22343349 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 182-515 |
| Cow position: | chr10:67142988-67143327 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 169 |
| Conread position: | 182-520 |
| Cow position: | chr10:17958294-17957944 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 51, 114 |
| Conread position: | 182-520 |
| Cow position: | chr10:28255190-28255536 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 182-520 |
| Cow position: | chr10:41159632-41159285 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 53, 144 |
| Conread position: | 182-520 |
| Cow position: | chr10:48375234-48375581 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-520 |
| Cow position: | chr10:55095483-55095136 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 53, 127 |
| Conread position: | 182-521 |
| Cow position: | chr10:21738536-21738885 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-523 |
| Cow position: | chr10:38543698-38544043 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 47, 143 |
| Conread position: | 184-520 |
| Cow position: | chr10:21489160-21488820 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 49, 89 |
| Conread position: | 184-525 |
| Cow position: | chr10:49186281-49186626 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 147 |
| Conread position: | 187-420 |
| Cow position: | chr10:29107567-29107802 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 35 |
| Conread position: | 187-450 |
| Cow position: | chr10:40642146-40641890 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 42, 124 |
| Conread position: | 187-451 |
| Cow position: | chr10:25651205-25651472 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 51, 139 |
| Conread position: | 187-451 |
| Cow position: | chr10:33871500-33871233 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-451 |
| Cow position: | chr10:37127582-37127849 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-488 |
| Cow position: | chr10:31525936-31525638 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 109 |
| Conread position: | 187-488 |
| Cow position: | chr10:41879135-41878834 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 46, 65 |
| Conread position: | 187-507 |
| Cow position: | chr10:19705417-19705742 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 44, 140 |
| Conread position: | 187-521 |
| Cow position: | chr10:22347172-22346829 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-521 |
| Cow position: | chr10:39209963-39209619 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-524 |
| Cow position: | chr10:44670455-44670795 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 109, 49 |
| Conread position: | 187-528 |
| Cow position: | chr10:24295072-24295421 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 188-514 |
| Cow position: | chr10:57555131-57555462 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 45, 108 |
| Conread position: | 188-520 |
| Cow position: | chr10:6556745-6556404 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 48, 138 |
| Conread position: | 188-520 |
| Cow position: | chr10:15488751-15488409 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 45, 138 |
| Conread position: | 188-520 |
| Cow position: | chr10:39814188-39814528 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 130 |
| Conread position: | 191-451 |
| Cow position: | chr10:51950890-51951153 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 42, 135 |
| Conread position: | 198-520 |
| Cow position: | chr10:7279838-7280163 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 208-520 |
| Cow position: | chr10:29844469-29844786 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 25, 101 |
Show alignments to all cow chromosomes.