Cow genome map
| Conread name: | Ss1.1-rptbr0110_c10.5 |
| Conread position: | 169-451 |
| Cow position: | chr13:34343847-34343562 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 64, 157 |
| Conread position: | 174-447 |
| Cow position: | chr13:43149541-43149266 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 59, 90 |
| Conread position: | 174-522 |
| Cow position: | chr13:35759212-35758854 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 20, 56 |
| Conread position: | 181-409 |
| Cow position: | chr13:7049575-7049344 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 52, 146 |
| Conread position: | 181-421 |
| Cow position: | chr13:9299592-9299354 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-451 |
| Cow position: | chr13:4943313-4943039 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-451 |
| Cow position: | chr13:17329903-17330173 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 48, 103 |
| Conread position: | 181-451 |
| Cow position: | chr13:18331178-18331454 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 15, 147 |
| Conread position: | 181-451 |
| Cow position: | chr13:19637076-19636801 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-451 |
| Cow position: | chr13:34031518-34031247 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 52, 14 |
| Conread position: | 181-453 |
| Cow position: | chr13:30470438-30470714 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 181-453 |
| Cow position: | chr13:32735266-32735540 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-520 |
| Cow position: | chr13:13901792-13901443 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 12, 148 |
| Conread position: | 181-520 |
| Cow position: | chr13:34040417-34040753 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 182-451 |
| Cow position: | chr13:679703-679431 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 146 |
| Conread position: | 182-451 |
| Cow position: | chr13:17310342-17310070 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 56, 127 |
| Conread position: | 182-451 |
| Cow position: | chr13:33524033-33524303 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 182-451 |
| Cow position: | chr13:59979336-59979608 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 56, 134 |
| Conread position: | 182-458 |
| Cow position: | chr13:16252592-16252872 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 22, 128 |
| Conread position: | 182-520 |
| Cow position: | chr13:3759703-3760050 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-520 |
| Cow position: | chr13:16921384-16921037 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-520 |
| Cow position: | chr13:34869887-34869550 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 186-451 |
| Cow position: | chr13:36105075-36104813 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 47, 153 |
| Conread position: | 187-451 |
| Cow position: | chr13:11796791-11797052 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 109 |
| Conread position: | 187-520 |
| Cow position: | chr13:23455357-23455014 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 32, 123 |
| Conread position: | 187-520 |
| Cow position: | chr13:49975597-49975255 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 188-515 |
| Cow position: | chr13:31508825-31508490 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 46, 121 |
| Conread position: | 188-520 |
| Cow position: | chr13:11389125-11388784 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 50, 138 |
| Conread position: | 191-418 |
| Cow position: | chr13:28788798-28788574 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 42, 31 |
| Conread position: | 192-417 |
| Cow position: | chr13:21400749-21400522 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 41, 132 |
| Conread position: | 192-451 |
| Cow position: | chr13:54239524-54239786 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 41, 134 |
| Conread position: | 192-520 |
| Cow position: | chr13:49613620-49613957 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 41, 117 |
| Conread position: | 192-523 |
| Cow position: | chr13:15922542-15922883 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 41, 136 |
| Conread position: | 224-521 |
| Cow position: | chr13:38067284-38067586 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 9, 111 |
Show alignments to all cow chromosomes.