Cow genome map
| Conread name: | Ss1.1-rptbr0110_c10.5 |
| Conread position: | 136-520 |
| Cow position: | chr15:23666987-23667381 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 15, 174 |
| Conread position: | 169-520 |
| Cow position: | chr15:18578520-18578165 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 61, 23 |
| Conread position: | 171-528 |
| Cow position: | chr15:9431743-9431379 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 139 |
| Conread position: | 173-451 |
| Cow position: | chr15:21965813-21965537 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 60, 81 |
| Conread position: | 174-521 |
| Cow position: | chr15:12418901-12419256 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 152 |
| Conread position: | 174-521 |
| Cow position: | chr15:15345298-15345657 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 22, 136 |
| Conread position: | 176-432 |
| Cow position: | chr15:24287670-24287929 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 59, 15 |
| Conread position: | 180-451 |
| Cow position: | chr15:2486710-2486985 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 147 |
| Conread position: | 181-450 |
| Cow position: | chr15:2900452-2900725 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 129 |
| Conread position: | 181-451 |
| Cow position: | chr15:314279-314550 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 146 |
| Conread position: | 181-451 |
| Cow position: | chr15:4727003-4726730 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 136 |
| Conread position: | 181-451 |
| Cow position: | chr15:20412396-20412123 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-451 |
| Cow position: | chr15:35751498-35751772 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-502 |
| Cow position: | chr15:17035864-17036189 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 15, 130 |
| Conread position: | 181-520 |
| Cow position: | chr15:2078446-2078101 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 15, 175 |
| Conread position: | 181-520 |
| Cow position: | chr15:24296993-24296644 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 182-431 |
| Cow position: | chr15:610442-610693 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 41, 145 |
| Conread position: | 182-432 |
| Cow position: | chr15:28488326-28488580 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 54, 144 |
| Conread position: | 182-451 |
| Cow position: | chr15:1831583-1831851 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 182-451 |
| Cow position: | chr15:2645849-2646121 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-451 |
| Cow position: | chr15:21534324-21534592 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 114, 56 |
| Conread position: | 182-451 |
| Cow position: | chr15:53410684-53410416 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 51, 114 |
| Conread position: | 182-507 |
| Cow position: | chr15:7940233-7939899 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 122 |
| Conread position: | 182-520 |
| Cow position: | chr15:4948302-4947957 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 56, 127 |
| Conread position: | 182-520 |
| Cow position: | chr15:16189972-16190319 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-520 |
| Cow position: | chr15:32713004-32712660 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 69 |
| Conread position: | 182-521 |
| Cow position: | chr15:17397541-17397194 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 182-521 |
| Cow position: | chr15:18265962-18266314 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 182-521 |
| Cow position: | chr15:53340014-53339675 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 170 |
| Conread position: | 182-522 |
| Cow position: | chr15:17294846-17294496 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 51, 134 |
| Conread position: | 183-432 |
| Cow position: | chr15:6551965-6552219 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 167 |
| Conread position: | 184-446 |
| Cow position: | chr15:1784132-1783871 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 49, 119 |
| Conread position: | 184-451 |
| Cow position: | chr15:51219539-51219273 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 49, 117 |
| Conread position: | 185-528 |
| Cow position: | chr15:3890695-3890348 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 48, 111 |
| Conread position: | 187-431 |
| Cow position: | chr15:31859156-31859401 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 37 |
| Conread position: | 187-432 |
| Cow position: | chr15:20405964-20406213 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-449 |
| Cow position: | chr15:7552088-7551828 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 49, 118 |
| Conread position: | 187-451 |
| Cow position: | chr15:4923942-4923675 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-451 |
| Cow position: | chr15:21828445-21828176 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 109, 137 |
| Conread position: | 187-451 |
| Cow position: | chr15:36144401-36144134 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-507 |
| Cow position: | chr15:36330666-36330996 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-520 |
| Cow position: | chr15:4080443-4080783 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr15:7564791-7564450 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 51, 138 |
| Conread position: | 187-520 |
| Cow position: | chr15:25205213-25205554 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-520 |
| Cow position: | chr15:33123174-33122832 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 193-463 |
| Cow position: | chr15:20042483-20042746 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 40, 117 |
| Conread position: | 196-525 |
| Cow position: | chr15:8410815-8410494 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 199-520 |
| Cow position: | chr15:42531701-42531371 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 39, 110 |
| Conread position: | 208-451 |
| Cow position: | chr15:20834845-20834599 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 7, 30 |
Show alignments to all cow chromosomes.