Cow genome map
| Conread name: | Ss1.1-rptbr0110_c10.5 |
| Conread position: | 137-521 |
| Cow position: | chr16:5633799-5634181 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 259 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 167-427 |
| Cow position: | chr16:20750184-20749928 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 9 |
| Conread position: | 173-418 |
| Cow position: | chr16:32740843-32740598 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 23, 10 |
| Conread position: | 173-524 |
| Cow position: | chr16:27822789-27823150 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 139 |
| Conread position: | 174-431 |
| Cow position: | chr16:16992511-16992247 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 184 |
| Conread position: | 174-451 |
| Cow position: | chr16:41165294-41165575 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 136 |
| Conread position: | 174-451 |
| Cow position: | chr16:54323863-54324144 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 153 |
| Conread position: | 175-451 |
| Cow position: | chr16:2409431-2409711 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 21, 179 |
| Conread position: | 176-437 |
| Cow position: | chr16:25742338-25742078 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 61, 125 |
| Conread position: | 176-451 |
| Cow position: | chr16:3827873-3828149 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 57, 147 |
| Conread position: | 176-524 |
| Cow position: | chr16:20200588-20200231 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 50, 164 |
| Conread position: | 179-451 |
| Cow position: | chr16:17948804-17949066 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 54, 24 |
| Conread position: | 181-420 |
| Cow position: | chr16:838740-838496 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-451 |
| Cow position: | chr16:8814653-8814926 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-451 |
| Cow position: | chr16:12536495-12536767 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 136 |
| Conread position: | 181-451 |
| Cow position: | chr16:23250525-23250799 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 7, 129 |
| Conread position: | 181-451 |
| Cow position: | chr16:23534455-23534729 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 7, 149 |
| Conread position: | 181-507 |
| Cow position: | chr16:7675005-7675335 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 52, 147 |
| Conread position: | 181-520 |
| Cow position: | chr16:10439702-10439366 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 58 |
| Conread position: | 181-520 |
| Cow position: | chr16:15186523-15186183 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 135 |
| Conread position: | 181-520 |
| Cow position: | chr16:25443084-25442739 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-520 |
| Cow position: | chr16:26665185-26664836 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 181-520 |
| Cow position: | chr16:28469602-28469952 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-520 |
| Cow position: | chr16:43895810-43896154 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-521 |
| Cow position: | chr16:25343428-25343079 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 7, 146 |
| Conread position: | 181-528 |
| Cow position: | chr16:40556456-40556811 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 12, 131 |
| Conread position: | 182-432 |
| Cow position: | chr16:11284673-11284422 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-525 |
| Cow position: | chr16:338625-338283 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 119 |
| Conread position: | 183-410 |
| Cow position: | chr16:30049986-30049756 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 126 |
| Conread position: | 184-420 |
| Cow position: | chr16:1433644-1433405 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 125 |
| Conread position: | 184-451 |
| Cow position: | chr16:25259254-25258987 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 50, 7 |
| Conread position: | 184-527 |
| Cow position: | chr16:18617680-18618024 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 55 |
| Conread position: | 185-420 |
| Cow position: | chr16:25456012-25456251 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 48, 141 |
| Conread position: | 187-451 |
| Cow position: | chr16:16031343-16031078 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 109, 36 |
| Conread position: | 187-451 |
| Cow position: | chr16:18974576-18974313 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-451 |
| Cow position: | chr16:41162020-41162286 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 46, 140 |
| Conread position: | 187-451 |
| Cow position: | chr16:42162191-42161928 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 109 |
| Conread position: | 187-517 |
| Cow position: | chr16:49743993-49744331 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-520 |
| Cow position: | chr16:33983-33641 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 139 |
| Conread position: | 187-520 |
| Cow position: | chr16:27594959-27594617 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-521 |
| Cow position: | chr16:3770566-3770909 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 46, 5 |
| Conread position: | 187-521 |
| Cow position: | chr16:7466057-7465713 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 51, 122 |
| Conread position: | 187-524 |
| Cow position: | chr16:29035346-29035004 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-529 |
| Cow position: | chr16:29207784-29208137 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 191-520 |
| Cow position: | chr16:5663287-5662949 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 42, 135 |
| Conread position: | 208-528 |
| Cow position: | chr16:22800250-22800571 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 95 |
| Conread position: | 209-520 |
| Cow position: | chr16:41684837-41685158 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 22, 117 |
Show alignments to all cow chromosomes.