Cow genome map
| Conread name: | Ss1.1-rptbr0110_c10.5 |
| Conread position: | 167-447 |
| Cow position: | chr18:27835838-27836114 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 19 |
| Conread position: | 173-430 |
| Cow position: | chr18:31250218-31250475 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 60, 90 |
| Conread position: | 173-519 |
| Cow position: | chr18:14422511-14422168 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 60, 123 |
| Conread position: | 173-524 |
| Cow position: | chr18:16146765-16147121 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 238 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 28, 154 |
| Conread position: | 173-524 |
| Cow position: | chr18:44183011-44183365 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 63, 77 |
| Conread position: | 176-518 |
| Cow position: | chr18:23441578-23441925 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 57, 151 |
| Conread position: | 180-521 |
| Cow position: | chr18:40315191-40315543 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 58, 37 |
| Conread position: | 181-451 |
| Cow position: | chr18:8249617-8249343 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 5, 146 |
| Conread position: | 181-451 |
| Cow position: | chr18:29864370-29864644 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 5, 148 |
| Conread position: | 181-451 |
| Cow position: | chr18:51483095-51482821 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 146 |
| Conread position: | 181-515 |
| Cow position: | chr18:36510858-36510513 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-520 |
| Cow position: | chr18:37508203-37507855 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-520 |
| Cow position: | chr18:52655051-52654704 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-521 |
| Cow position: | chr18:41838550-41838899 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 15, 116 |
| Conread position: | 181-523 |
| Cow position: | chr18:25922627-25922277 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 129 |
| Conread position: | 182-451 |
| Cow position: | chr18:23702847-23703120 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 128 |
| Conread position: | 182-451 |
| Cow position: | chr18:28767035-28766763 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-453 |
| Cow position: | chr18:24985185-24985460 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 42, 9 |
| Conread position: | 182-520 |
| Cow position: | chr18:37701253-37701600 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 187-451 |
| Cow position: | chr18:32437874-32438141 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-451 |
| Cow position: | chr18:51696213-51695946 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-503 |
| Cow position: | chr18:54026030-54025718 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 108 |
| Conread position: | 187-519 |
| Cow position: | chr18:16464627-16464968 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-520 |
| Cow position: | chr18:11272623-11272966 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 140 |
| Conread position: | 187-520 |
| Cow position: | chr18:19354597-19354259 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 116 |
| Conread position: | 187-520 |
| Cow position: | chr18:24618367-24618025 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr18:51460611-51460953 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 46, 11 |
| Conread position: | 188-451 |
| Cow position: | chr18:47743724-47743458 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 45, 138 |
| Conread position: | 188-527 |
| Cow position: | chr18:22183294-22183639 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 45, 9 |
| Conread position: | 192-451 |
| Cow position: | chr18:23799873-23799611 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 46, 136 |
| Conread position: | 195-520 |
| Cow position: | chr18:23660272-23660609 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 208-451 |
| Cow position: | chr18:32165719-32165962 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 25, 96 |
Show alignments to all cow chromosomes.