Cow genome map
| Conread name: | Ss1.1-rptbr0110_c10.5 |
| Conread position: | 135-420 |
| Cow position: | chr22:43313843-43314130 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 24, 37 |
| Conread position: | 174-516 |
| Cow position: | chr22:32205218-32204866 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 153 |
| Conread position: | 175-395 |
| Cow position: | chr22:44237542-44237325 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 63, 74 |
| Conread position: | 176-451 |
| Cow position: | chr22:11780818-11781096 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 57, 152 |
| Conread position: | 176-525 |
| Cow position: | chr22:41242523-41242175 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 62, 87 |
| Conread position: | 179-524 |
| Cow position: | chr22:43047210-43047555 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 221, 142 |
| Conread position: | 181-451 |
| Cow position: | chr22:558560-558834 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-451 |
| Cow position: | chr22:18813889-18814163 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-451 |
| Cow position: | chr22:37291529-37291803 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 181-451 |
| Cow position: | chr22:42993318-42993044 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-451 |
| Cow position: | chr22:44398583-44398310 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 15, 147 |
| Conread position: | 181-520 |
| Cow position: | chr22:19141543-19141891 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-520 |
| Cow position: | chr22:41847405-41847753 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 5, 146 |
| Conread position: | 181-527 |
| Cow position: | chr22:15309810-15310166 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 182-418 |
| Cow position: | chr22:18614426-18614186 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-432 |
| Cow position: | chr22:5889040-5889294 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-451 |
| Cow position: | chr22:8132642-8132914 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 54, 127 |
| Conread position: | 182-451 |
| Cow position: | chr22:13208555-13208285 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 182-451 |
| Cow position: | chr22:35669525-35669797 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 182-451 |
| Cow position: | chr22:44367336-44367608 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 183-520 |
| Cow position: | chr22:34170480-34170133 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 56, 126 |
| Conread position: | 187-451 |
| Cow position: | chr22:8826184-8826447 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 46, 108 |
| Conread position: | 187-451 |
| Cow position: | chr22:25335886-25335620 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-451 |
| Cow position: | chr22:36562306-36562564 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 46, 74 |
| Conread position: | 187-507 |
| Cow position: | chr22:22957181-22957505 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 51, 109 |
| Conread position: | 187-520 |
| Cow position: | chr22:980425-980083 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr22:1880946-1880603 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr22:20238699-20239040 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr22:21194077-21194420 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr22:21591563-21591221 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 45, 139 |
| Conread position: | 187-520 |
| Cow position: | chr22:29853994-29853652 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr22:30676573-30676915 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr22:39467374-39467717 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-521 |
| Cow position: | chr22:29499681-29499337 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-522 |
| Cow position: | chr22:539246-538902 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-522 |
| Cow position: | chr22:11802914-11803260 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-578 |
| Cow position: | chr22:36185758-36185365 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 188-520 |
| Cow position: | chr22:44493188-44492847 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 138 |
| Conread position: | 191-439 |
| Cow position: | chr22:22043859-22043607 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 23, 134 |
| Conread position: | 191-451 |
| Cow position: | chr22:2849463-2849721 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 122 |
| Conread position: | 192-520 |
| Cow position: | chr22:44459794-44459459 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 41, 134 |
| Conread position: | 195-435 |
| Cow position: | chr22:40608533-40608300 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 39, 106 |
Show alignments to all cow chromosomes.