Cow genome map
| Conread name: | Ss1.1-rptbr0110_c10.5 |
| Conread position: | 175-420 |
| Cow position: | chr28:30096596-30096347 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 176-525 |
| Cow position: | chr28:7027583-7027945 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 47, 152 |
| Conread position: | 180-451 |
| Cow position: | chr28:2121646-2121372 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 8, 59 |
| Conread position: | 181-420 |
| Cow position: | chr28:34596440-34596197 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-451 |
| Cow position: | chr28:1812748-1813021 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 42 |
| Conread position: | 181-451 |
| Cow position: | chr28:3190059-3190333 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 148 |
| Conread position: | 181-451 |
| Cow position: | chr28:5749509-5749783 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 181-520 |
| Cow position: | chr28:1165705-1166050 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-520 |
| Cow position: | chr28:7004188-7003844 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 52, 145 |
| Conread position: | 181-520 |
| Cow position: | chr28:26424072-26424417 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 15, 132 |
| Conread position: | 181-521 |
| Cow position: | chr28:1215648-1215997 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 181-521 |
| Cow position: | chr28:12408030-12408381 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 181-521 |
| Cow position: | chr28:17665135-17665485 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-527 |
| Cow position: | chr28:1773561-1773221 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 58, 145 |
| Conread position: | 182-519 |
| Cow position: | chr28:6777750-6778096 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 51, 173 |
| Conread position: | 182-520 |
| Cow position: | chr28:1460286-1459939 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-520 |
| Cow position: | chr28:17631290-17630943 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-520 |
| Cow position: | chr28:30805951-30805604 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 184-416 |
| Cow position: | chr28:13446930-13447167 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 54, 174 |
| Conread position: | 187-417 |
| Cow position: | chr28:29760451-29760681 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 49, 83 |
| Conread position: | 187-432 |
| Cow position: | chr28:7828674-7828425 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-432 |
| Cow position: | chr28:22041217-22041466 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-451 |
| Cow position: | chr28:784848-784581 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-507 |
| Cow position: | chr28:32304056-32304392 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 181 |
| Conread position: | 187-513 |
| Cow position: | chr28:483408-483744 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr28:307667-307998 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 46, 36 |
| Conread position: | 187-520 |
| Cow position: | chr28:1955544-1955199 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 46, 140 |
| Conread position: | 187-520 |
| Cow position: | chr28:5939667-5939331 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-520 |
| Cow position: | chr28:8381222-8380880 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 51, 122 |
| Conread position: | 187-520 |
| Cow position: | chr28:9181047-9180719 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr28:22258968-22259313 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-520 |
| Cow position: | chr28:23311130-23311464 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr28:24885031-24884689 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-522 |
| Cow position: | chr28:14703198-14703544 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 46, 141 |
| Conread position: | 191-453 |
| Cow position: | chr28:15918347-15918612 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 45, 135 |
| Conread position: | 191-520 |
| Cow position: | chr28:10644287-10644626 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 47, 134 |
| Conread position: | 192-433 |
| Cow position: | chr28:11788422-11788669 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 38, 135 |
| Conread position: | 192-503 |
| Cow position: | chr28:2086642-2086326 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 41, 134 |
| Conread position: | 192-520 |
| Cow position: | chr28:5210292-5209955 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 41, 117 |
| Conread position: | 192-520 |
| Cow position: | chr28:15033930-15034267 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 41, 136 |
| Conread position: | 196-453 |
| Cow position: | chr28:759044-759304 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 42, 27 |
Show alignments to all cow chromosomes.