Cow genome map
| Conread name: | Ss1.1-rptbr0110_c10.5 |
| Conread position: | 169-451 |
| Cow position: | chr29:7428953-7429237 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 27, 160 |
| Conread position: | 173-526 |
| Cow position: | chr29:16729746-16730105 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 15, 117 |
| Conread position: | 175-520 |
| Cow position: | chr29:2839178-2839533 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 152 |
| Conread position: | 175-521 |
| Cow position: | chr29:2692322-2691968 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 152 |
| Conread position: | 180-453 |
| Cow position: | chr29:15624551-15624827 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 53, 146 |
| Conread position: | 180-520 |
| Cow position: | chr29:10022174-10022524 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 147 |
| Conread position: | 181-450 |
| Cow position: | chr29:45206664-45206391 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 181-451 |
| Cow position: | chr29:46305-46579 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-451 |
| Cow position: | chr29:2101996-2101722 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-451 |
| Cow position: | chr29:10645254-10645527 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 7, 147 |
| Conread position: | 181-451 |
| Cow position: | chr29:15996228-15996502 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-451 |
| Cow position: | chr29:19621110-19621384 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-451 |
| Cow position: | chr29:19655775-19655501 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 5, 146 |
| Conread position: | 181-517 |
| Cow position: | chr29:40500859-40501201 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 15, 71 |
| Conread position: | 181-520 |
| Cow position: | chr29:6263850-6264191 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 15, 116 |
| Conread position: | 181-525 |
| Cow position: | chr29:6214641-6214287 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 52, 69 |
| Conread position: | 181-528 |
| Cow position: | chr29:39077561-39077912 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 13, 128 |
| Conread position: | 182-420 |
| Cow position: | chr29:2746300-2746536 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 113, 54 |
| Conread position: | 182-450 |
| Cow position: | chr29:15260841-15261112 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 182-451 |
| Cow position: | chr29:13605763-13606032 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 51, 115 |
| Conread position: | 182-451 |
| Cow position: | chr29:38206508-38206780 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-520 |
| Cow position: | chr29:32557597-32557943 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-522 |
| Cow position: | chr29:14082574-14082921 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 47, 126 |
| Conread position: | 186-451 |
| Cow position: | chr29:13018841-13018573 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 47, 140 |
| Conread position: | 187-451 |
| Cow position: | chr29:40470568-40470302 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-520 |
| Cow position: | chr29:409112-409454 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr29:7846538-7846198 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 46, 121 |
| Conread position: | 187-520 |
| Cow position: | chr29:13922650-13922308 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr29:16346350-16346008 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 46, 128 |
| Conread position: | 187-520 |
| Cow position: | chr29:19889723-19889391 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 188-520 |
| Cow position: | chr29:27977685-27978020 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 36 |
| Conread position: | 188-520 |
| Cow position: | chr29:31183551-31183210 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 138 |
| Conread position: | 195-451 |
| Cow position: | chr29:25930377-25930636 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 196-520 |
| Cow position: | chr29:35299047-35298718 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 37, 105 |
Show alignments to all cow chromosomes.