Cow genome map
| Conread name: | Ss1.1-rptbr0110_c10.5 |
| Conread position: | 22-417 |
| Cow position: | chr3:43427993-43428388 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 21 |
| Conread position: | 166-507 |
| Cow position: | chr3:40825475-40825130 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 67, 15 |
| Conread position: | 173-341 |
| Cow position: | chr3:68130708-68130877 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 96, 118 |
| Conread position: | 173-520 |
| Cow position: | chr3:58784078-58784432 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 121, 134 |
| Conread position: | 175-524 |
| Cow position: | chr3:84879778-84880127 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 120, 151 |
| Conread position: | 176-499 |
| Cow position: | chr3:80544534-80544213 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 54, 120 |
| Conread position: | 180-451 |
| Cow position: | chr3:39024942-39024671 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 6, 117 |
| Conread position: | 180-520 |
| Cow position: | chr3:28670155-28669805 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 13, 147 |
| Conread position: | 181-451 |
| Cow position: | chr3:7477854-7478128 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-451 |
| Cow position: | chr3:10242725-10242452 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 5, 38 |
| Conread position: | 181-451 |
| Cow position: | chr3:21180630-21180899 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 15, 116 |
| Conread position: | 181-451 |
| Cow position: | chr3:24444030-24444303 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-451 |
| Cow position: | chr3:69931769-69932037 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 15, 10 |
| Conread position: | 181-500 |
| Cow position: | chr3:63256181-63255858 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 48, 116 |
| Conread position: | 181-520 |
| Cow position: | chr3:43191219-43191568 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 181-524 |
| Cow position: | chr3:53413167-53412825 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 49, 25 |
| Conread position: | 182-451 |
| Cow position: | chr3:19940992-19940723 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 128 |
| Conread position: | 182-507 |
| Cow position: | chr3:72670487-72670818 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 182-520 |
| Cow position: | chr3:34505283-34505629 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 51, 40 |
| Conread position: | 182-520 |
| Cow position: | chr3:41082236-41081889 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-520 |
| Cow position: | chr3:68890506-68890853 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 182-521 |
| Cow position: | chr3:2919689-2919340 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 183-520 |
| Cow position: | chr3:74059594-74059249 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 142 |
| Conread position: | 185-451 |
| Cow position: | chr3:42449174-42448905 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 48, 141 |
| Conread position: | 186-451 |
| Cow position: | chr3:19946309-19946046 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 47, 110 |
| Conread position: | 186-451 |
| Cow position: | chr3:45035064-45034800 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 47, 111 |
| Conread position: | 186-451 |
| Cow position: | chr3:45976563-45976295 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 47, 140 |
| Conread position: | 186-451 |
| Cow position: | chr3:68871690-68871957 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 47, 140 |
| Conread position: | 186-520 |
| Cow position: | chr3:29329224-29329566 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 52, 139 |
| Conread position: | 186-520 |
| Cow position: | chr3:64652673-64652332 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 47, 140 |
| Conread position: | 186-528 |
| Cow position: | chr3:68697909-68698259 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 52, 140 |
| Conread position: | 187-420 |
| Cow position: | chr3:2367084-2367321 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 139 |
| Conread position: | 187-420 |
| Cow position: | chr3:3839460-3839697 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-432 |
| Cow position: | chr3:1031022-1030774 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 121 |
| Conread position: | 187-447 |
| Cow position: | chr3:16224951-16224695 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-449 |
| Cow position: | chr3:64275154-64274899 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 109 |
| Conread position: | 187-450 |
| Cow position: | chr3:77425762-77425503 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 122, 105 |
| Conread position: | 187-451 |
| Cow position: | chr3:3525099-3524832 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-451 |
| Cow position: | chr3:13477406-13477145 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 46, 77 |
| Conread position: | 187-451 |
| Cow position: | chr3:37971112-37970844 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-451 |
| Cow position: | chr3:41208547-41208814 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-451 |
| Cow position: | chr3:56337897-56338156 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 137 |
| Conread position: | 187-451 |
| Cow position: | chr3:66622276-66622009 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-458 |
| Cow position: | chr3:3982693-3982420 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 50, 139 |
| Conread position: | 187-504 |
| Cow position: | chr3:29190013-29190336 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 125 |
| Conread position: | 187-520 |
| Cow position: | chr3:2870854-2870512 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr3:6687860-6687517 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr3:7156653-7156995 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr3:19880709-19880368 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-520 |
| Cow position: | chr3:32620984-32621318 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 46, 119 |
| Conread position: | 187-520 |
| Cow position: | chr3:48845060-48844718 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-521 |
| Cow position: | chr3:19754897-19755242 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 46, 141 |
| Conread position: | 187-521 |
| Cow position: | chr3:36862391-36862736 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-524 |
| Cow position: | chr3:40338082-40338429 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-528 |
| Cow position: | chr3:64026072-64026422 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 188-398 |
| Cow position: | chr3:58128149-58127934 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 47, 140 |
| Conread position: | 188-447 |
| Cow position: | chr3:29575056-29575318 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 45, 121 |
| Conread position: | 188-451 |
| Cow position: | chr3:32201092-32200828 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 37, 139 |
| Conread position: | 189-453 |
| Cow position: | chr3:54740298-54740563 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 72 |
| Conread position: | 192-462 |
| Cow position: | chr3:5993008-5993280 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 32, 116 |
| Conread position: | 192-492 |
| Cow position: | chr3:47947219-47947520 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 53, 142 |
| Conread position: | 195-519 |
| Cow position: | chr3:23288283-23288609 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 38, 34 |
| Conread position: | 198-520 |
| Cow position: | chr3:4288139-4287810 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 35, 128 |
| Conread position: | 209-483 |
| Cow position: | chr3:2508642-2508918 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 16, 102 |
| Conread position: | 216-519 |
| Cow position: | chr3:39878999-39879305 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 17, 111 |
Show alignments to all cow chromosomes.