Cow genome map
| Conread name: | Ss1.1-rptbr0110_c10.5 |
| Conread position: | 164-525 |
| Cow position: | chr4:14794327-14793962 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 16, 159 |
| Conread position: | 169-420 |
| Cow position: | chr4:43882996-43882740 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 141 |
| Conread position: | 171-528 |
| Cow position: | chr4:46666790-46666428 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 125 |
| Conread position: | 175-421 |
| Cow position: | chr4:20066457-20066703 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 58, 126 |
| Conread position: | 176-417 |
| Cow position: | chr4:41336441-41336205 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 114, 49 |
| Conread position: | 176-451 |
| Cow position: | chr4:52229411-52229684 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 59 |
| Conread position: | 176-507 |
| Cow position: | chr4:45655286-45655624 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 44, 153 |
| Conread position: | 180-452 |
| Cow position: | chr4:30247115-30246842 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 56, 120 |
| Conread position: | 180-462 |
| Cow position: | chr4:5612121-5612400 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 115, 96 |
| Conread position: | 180-519 |
| Cow position: | chr4:34177392-34177732 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 13, 118 |
| Conread position: | 181-451 |
| Cow position: | chr4:2350847-2351121 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 181-520 |
| Cow position: | chr4:10883413-10883064 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 181-520 |
| Cow position: | chr4:17924086-17924434 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 5, 36 |
| Conread position: | 181-520 |
| Cow position: | chr4:26875912-26876261 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-521 |
| Cow position: | chr4:33070965-33071314 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 15, 172 |
| Conread position: | 181-521 |
| Cow position: | chr4:33495432-33495082 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-523 |
| Cow position: | chr4:25597610-25597963 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-523 |
| Cow position: | chr4:48028726-48028377 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 40 |
| Conread position: | 182-451 |
| Cow position: | chr4:16061149-16060881 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 182-451 |
| Cow position: | chr4:28833599-28833326 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 56, 174 |
| Conread position: | 182-451 |
| Cow position: | chr4:45042497-45042225 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 182-520 |
| Cow position: | chr4:15460391-15460738 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-520 |
| Cow position: | chr4:30473087-30472740 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 187-450 |
| Cow position: | chr4:17034634-17034896 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 46, 109 |
| Conread position: | 187-451 |
| Cow position: | chr4:161027-160759 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 123 |
| Conread position: | 187-451 |
| Cow position: | chr4:1048395-1048661 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 121 |
| Conread position: | 187-451 |
| Cow position: | chr4:8671190-8670924 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 46, 140 |
| Conread position: | 187-451 |
| Cow position: | chr4:12607030-12607298 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-451 |
| Cow position: | chr4:33021770-33022037 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-507 |
| Cow position: | chr4:41296782-41297107 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 109 |
| Conread position: | 187-519 |
| Cow position: | chr4:36898238-36897901 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 43, 120 |
| Conread position: | 187-520 |
| Cow position: | chr4:531287-530945 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr4:1928770-1929112 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 46, 129 |
| Conread position: | 187-520 |
| Cow position: | chr4:3127676-3127337 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 116 |
| Conread position: | 187-520 |
| Cow position: | chr4:5442955-5443298 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 232 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 46, 123 |
| Conread position: | 187-520 |
| Cow position: | chr4:17092001-17092338 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr4:32214042-32213699 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 28, 140 |
| Conread position: | 187-520 |
| Cow position: | chr4:40216705-40216363 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-520 |
| Cow position: | chr4:41956633-41956290 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-520 |
| Cow position: | chr4:41960769-41960426 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-525 |
| Cow position: | chr4:24809291-24809621 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 98, 75 |
| Conread position: | 187-529 |
| Cow position: | chr4:7509575-7509231 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 46, 76 |
| Conread position: | 187-533 |
| Cow position: | chr4:46586034-46586390 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 188-528 |
| Cow position: | chr4:44779358-44779707 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 45, 121 |
| Conread position: | 192-451 |
| Cow position: | chr4:1951701-1951962 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 41, 134 |
| Conread position: | 192-520 |
| Cow position: | chr4:16640472-16640135 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 46, 134 |
| Conread position: | 198-451 |
| Cow position: | chr4:8703411-8703155 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 35, 128 |
| Conread position: | 199-453 |
| Cow position: | chr4:3072182-3071926 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 34, 23 |
| Conread position: | 204-521 |
| Cow position: | chr4:41190788-41191107 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 29, 92 |
| Conread position: | 219-520 |
| Cow position: | chr4:17501494-17501804 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 14, 90 |
| Conread position: | 236-507 |
| Cow position: | chr4:18422707-18422983 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 60, 71 |
Show alignments to all cow chromosomes.