Cow genome map
| Conread name: | Ss1.1-rptbr0110_c10.5 |
| Conread position: | 171-451 |
| Cow position: | chr5:40348299-40348582 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 23, 156 |
| Conread position: | 173-525 |
| Cow position: | chr5:41896558-41896919 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 73, 154 |
| Conread position: | 176-397 |
| Cow position: | chr5:7584012-7584232 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 12, 121 |
| Conread position: | 176-517 |
| Cow position: | chr5:18399722-18400072 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 20, 5 |
| Conread position: | 181-451 |
| Cow position: | chr5:6152918-6153192 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 181-451 |
| Cow position: | chr5:7275804-7275534 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 116 |
| Conread position: | 181-451 |
| Cow position: | chr5:24296580-24296306 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 12, 146 |
| Conread position: | 181-451 |
| Cow position: | chr5:48806465-48806739 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-451 |
| Cow position: | chr5:64780034-64780308 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-520 |
| Cow position: | chr5:3787916-3787567 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 15, 173 |
| Conread position: | 181-520 |
| Cow position: | chr5:24100621-24100277 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-521 |
| Cow position: | chr5:49520687-49520339 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 15, 130 |
| Conread position: | 181-521 |
| Cow position: | chr5:55629962-55629611 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 182-432 |
| Cow position: | chr5:32774747-32774493 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 56, 127 |
| Conread position: | 182-451 |
| Cow position: | chr5:40130622-40130894 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 182-515 |
| Cow position: | chr5:46003904-46004243 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 114 |
| Conread position: | 182-519 |
| Cow position: | chr5:21379818-21380158 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 14, 151 |
| Conread position: | 182-521 |
| Cow position: | chr5:50505613-50505261 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-528 |
| Cow position: | chr5:4756206-4756561 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 186-451 |
| Cow position: | chr5:76097027-76096756 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 47, 140 |
| Conread position: | 187-451 |
| Cow position: | chr5:4017239-4017506 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-451 |
| Cow position: | chr5:54787150-54787416 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-452 |
| Cow position: | chr5:32364779-32364514 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 22, 109 |
| Conread position: | 187-513 |
| Cow position: | chr5:46778361-46778030 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 46, 109 |
| Conread position: | 187-518 |
| Cow position: | chr5:23958358-23958698 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 46, 168 |
| Conread position: | 187-519 |
| Cow position: | chr5:306442-306783 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr5:10841409-10841750 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr5:18120510-18120852 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr5:31708533-31708191 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr5:40922708-40923047 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr5:58190791-58191131 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 46, 138 |
| Conread position: | 187-520 |
| Cow position: | chr5:59062607-59062266 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-521 |
| Cow position: | chr5:12730747-12731087 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 188-451 |
| Cow position: | chr5:59145335-59145069 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 45, 121 |
| Conread position: | 188-453 |
| Cow position: | chr5:54695835-54696102 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 139 |
| Conread position: | 188-520 |
| Cow position: | chr5:58197988-58197646 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 45, 168 |
| Conread position: | 188-527 |
| Cow position: | chr5:16102103-16102450 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 45, 135 |
| Conread position: | 192-450 |
| Cow position: | chr5:73487092-73487353 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 46, 117 |
| Conread position: | 202-520 |
| Cow position: | chr5:10812793-10813120 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 31, 107 |
| Conread position: | 208-451 |
| Cow position: | chr5:26077239-26077485 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 101 |
Show alignments to all cow chromosomes.