Cow genome map
| Conread name: | Ss1.1-rptbr0110_c10.5 |
| Conread position: | 169-457 |
| Cow position: | chr6:27474552-27474263 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 64, 18 |
| Conread position: | 174-450 |
| Cow position: | chr6:40974302-40974022 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 153 |
| Conread position: | 175-453 |
| Cow position: | chr6:11723079-11723358 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 135 |
| Conread position: | 176-453 |
| Cow position: | chr6:15479727-15479449 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 61, 40 |
| Conread position: | 176-509 |
| Cow position: | chr6:53672194-53671859 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 62, 78 |
| Conread position: | 176-516 |
| Cow position: | chr6:6186358-6186012 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 154 |
| Conread position: | 180-520 |
| Cow position: | chr6:28186724-28187071 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 180-522 |
| Cow position: | chr6:2556757-2556403 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 53, 146 |
| Conread position: | 181-440 |
| Cow position: | chr6:44018717-44018980 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 5, 129 |
| Conread position: | 181-447 |
| Cow position: | chr6:17048426-17048157 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 147 |
| Conread position: | 181-450 |
| Cow position: | chr6:38874546-38874819 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-450 |
| Cow position: | chr6:50486688-50486963 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-451 |
| Cow position: | chr6:21974774-21974502 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 5, 66 |
| Conread position: | 181-451 |
| Cow position: | chr6:28171019-28170749 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 52, 122 |
| Conread position: | 181-451 |
| Cow position: | chr6:55540125-55540397 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 144 |
| Conread position: | 181-453 |
| Cow position: | chr6:15139057-15139333 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-507 |
| Cow position: | chr6:65843723-65843396 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-520 |
| Cow position: | chr6:25216414-25216070 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 135 |
| Conread position: | 181-520 |
| Cow position: | chr6:35874600-35874946 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 181-521 |
| Cow position: | chr6:3887398-3887751 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 148 |
| Conread position: | 181-522 |
| Cow position: | chr6:40552466-40552819 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 182-419 |
| Cow position: | chr6:33809746-33809505 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-431 |
| Cow position: | chr6:51148997-51148744 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 56, 144 |
| Conread position: | 182-432 |
| Cow position: | chr6:66388726-66388980 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-449 |
| Cow position: | chr6:28135044-28134775 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-451 |
| Cow position: | chr6:21890364-21890092 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-451 |
| Cow position: | chr6:53544206-53543943 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 208, 52 |
| Conread position: | 182-520 |
| Cow position: | chr6:14391043-14390696 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-520 |
| Cow position: | chr6:18513664-18513321 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 51, 114 |
| Conread position: | 182-520 |
| Cow position: | chr6:20351983-20352330 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-520 |
| Cow position: | chr6:40327528-40327185 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 51, 114 |
| Conread position: | 182-520 |
| Cow position: | chr6:43431244-43431591 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-520 |
| Cow position: | chr6:45588048-45587715 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 182-520 |
| Cow position: | chr6:46296402-46296055 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 182-528 |
| Cow position: | chr6:26668753-26669103 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 51, 32 |
| Conread position: | 186-520 |
| Cow position: | chr6:12664211-12664553 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 47, 140 |
| Conread position: | 186-520 |
| Cow position: | chr6:25791588-25791928 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 47, 142 |
| Conread position: | 187-427 |
| Cow position: | chr6:19104804-19105048 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 46, 129 |
| Conread position: | 187-431 |
| Cow position: | chr6:16516634-16516391 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 50, 17 |
| Conread position: | 187-440 |
| Cow position: | chr6:59316117-59316363 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 19, 25 |
| Conread position: | 187-451 |
| Cow position: | chr6:13849179-13848912 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-451 |
| Cow position: | chr6:43791475-43791740 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 46, 110 |
| Conread position: | 187-488 |
| Cow position: | chr6:27527913-27528214 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 46, 42 |
| Conread position: | 187-520 |
| Cow position: | chr6:329356-329698 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 141 |
| Conread position: | 187-520 |
| Cow position: | chr6:3151337-3151003 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr6:5750035-5749692 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 49, 123 |
| Conread position: | 187-520 |
| Cow position: | chr6:7139231-7139573 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-520 |
| Cow position: | chr6:13309277-13309620 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr6:13978859-13978518 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 46, 68 |
| Conread position: | 187-520 |
| Cow position: | chr6:17596186-17596528 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 41, 139 |
| Conread position: | 187-520 |
| Cow position: | chr6:44148441-44148781 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr6:59618190-59617848 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr6:62578089-62578431 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-524 |
| Cow position: | chr6:237744-238091 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 46, 37 |
| Conread position: | 187-528 |
| Cow position: | chr6:2376809-2376464 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-528 |
| Cow position: | chr6:6162216-6161868 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 46, 10 |
| Conread position: | 187-528 |
| Cow position: | chr6:28702605-28702950 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 46, 114 |
| Conread position: | 188-528 |
| Cow position: | chr6:28489465-28489810 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 45, 140 |
| Conread position: | 191-528 |
| Cow position: | chr6:27171684-27171339 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 42, 135 |
| Conread position: | 192-451 |
| Cow position: | chr6:12627801-12627540 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 41, 30 |
| Conread position: | 195-451 |
| Cow position: | chr6:68029250-68028990 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 208-520 |
| Cow position: | chr6:36529282-36528965 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 208-520 |
| Cow position: | chr6:39911417-39911096 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 118 |
Show alignments to all cow chromosomes.