Cow genome map
| Conread name: | Ss1.1-rptbr0110_c10.5 |
| Conread position: | 169-520 |
| Cow position: | chr7:46748201-46747848 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 67, 102 |
| Conread position: | 173-528 |
| Cow position: | chr7:5248251-5248606 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 227, 27 |
| Conread position: | 175-451 |
| Cow position: | chr7:10429213-10429492 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 118 |
| Conread position: | 176-451 |
| Cow position: | chr7:59139884-59139606 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 57, 148 |
| Conread position: | 176-458 |
| Cow position: | chr7:51192917-51192630 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 57, 150 |
| Conread position: | 181-447 |
| Cow position: | chr7:37417271-37417008 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 98, 51 |
| Conread position: | 181-450 |
| Cow position: | chr7:33403679-33403952 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-451 |
| Cow position: | chr7:444058-444328 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 116 |
| Conread position: | 181-451 |
| Cow position: | chr7:14137388-14137658 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 52, 128 |
| Conread position: | 181-451 |
| Cow position: | chr7:34151147-34150873 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-451 |
| Cow position: | chr7:55535713-55535987 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-451 |
| Cow position: | chr7:60728249-60728523 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 144 |
| Conread position: | 181-515 |
| Cow position: | chr7:11421376-11421716 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 106 |
| Conread position: | 181-520 |
| Cow position: | chr7:13531701-13532050 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-520 |
| Cow position: | chr7:21232803-21233152 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 12, 146 |
| Conread position: | 181-520 |
| Cow position: | chr7:38399022-38398675 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 181-521 |
| Cow position: | chr7:21987611-21987260 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 143 |
| Conread position: | 181-525 |
| Cow position: | chr7:1368479-1368833 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-528 |
| Cow position: | chr7:66907445-66907096 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 121 |
| Conread position: | 182-451 |
| Cow position: | chr7:25441982-25441709 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 182-451 |
| Cow position: | chr7:42303252-42303524 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 56, 127 |
| Conread position: | 182-451 |
| Cow position: | chr7:43396198-43396469 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 182-462 |
| Cow position: | chr7:5260732-5261005 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 47, 40 |
| Conread position: | 182-520 |
| Cow position: | chr7:20061677-20061341 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 103 |
| Conread position: | 182-520 |
| Cow position: | chr7:67430756-67430414 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 186-451 |
| Cow position: | chr7:22345319-22345587 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 143 |
| Conread position: | 186-451 |
| Cow position: | chr7:65813033-65812765 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 47, 123 |
| Conread position: | 186-529 |
| Cow position: | chr7:68440209-68439872 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 110, 22 |
| Conread position: | 187-420 |
| Cow position: | chr7:45169724-45169488 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 35 |
| Conread position: | 187-451 |
| Cow position: | chr7:8337563-8337296 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 50, 139 |
| Conread position: | 187-451 |
| Cow position: | chr7:11461935-11462202 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-451 |
| Cow position: | chr7:20434020-20433756 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 138 |
| Conread position: | 187-451 |
| Cow position: | chr7:42225600-42225864 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 139 |
| Conread position: | 187-451 |
| Cow position: | chr7:55040286-55040553 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-482 |
| Cow position: | chr7:65871370-65871667 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 50, 5 |
| Conread position: | 187-502 |
| Cow position: | chr7:48636527-48636208 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 22, 110 |
| Conread position: | 187-520 |
| Cow position: | chr7:13716-14053 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-520 |
| Cow position: | chr7:6665686-6665344 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 51, 139 |
| Conread position: | 187-520 |
| Cow position: | chr7:20557977-20557633 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr7:26927979-26928321 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-520 |
| Cow position: | chr7:27100091-27100433 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr7:34817844-34817502 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-520 |
| Cow position: | chr7:37165062-37164720 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-521 |
| Cow position: | chr7:34416149-34416492 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 51, 166 |
| Conread position: | 187-521 |
| Cow position: | chr7:39096351-39096687 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 114 |
| Conread position: | 187-524 |
| Cow position: | chr7:3127538-3127193 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 188-453 |
| Cow position: | chr7:21878473-21878737 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 44, 61 |
| Conread position: | 195-453 |
| Cow position: | chr7:51839405-51839145 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 198-529 |
| Cow position: | chr7:67677256-67676919 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 128 |
Show alignments to all cow chromosomes.