Cow genome map
| Conread name: | Ss1.1-rptbr0110_c10.5 |
| Conread position: | 169-451 |
| Cow position: | chr8:25413022-25412737 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 64, 140 |
| Conread position: | 171-527 |
| Cow position: | chr8:18291597-18291954 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 62, 93 |
| Conread position: | 173-432 |
| Cow position: | chr8:52211817-52211554 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 63, 152 |
| Conread position: | 173-449 |
| Cow position: | chr8:49414467-49414196 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 60, 101 |
| Conread position: | 175-451 |
| Cow position: | chr8:12313003-12313282 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 176-451 |
| Cow position: | chr8:24228675-24228395 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 17, 152 |
| Conread position: | 176-507 |
| Cow position: | chr8:75229-75557 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 47, 152 |
| Conread position: | 179-421 |
| Cow position: | chr8:13492820-13492574 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 8, 117 |
| Conread position: | 180-520 |
| Cow position: | chr8:45158149-45158482 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 8, 101 |
| Conread position: | 181-451 |
| Cow position: | chr8:14589484-14589758 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-451 |
| Cow position: | chr8:35471693-35471421 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 15, 84 |
| Conread position: | 181-451 |
| Cow position: | chr8:60062802-60062528 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-461 |
| Cow position: | chr8:34405759-34405482 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 57, 82 |
| Conread position: | 181-520 |
| Cow position: | chr8:11834918-11834570 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 15, 10 |
| Conread position: | 181-520 |
| Cow position: | chr8:17313426-17313077 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-520 |
| Cow position: | chr8:25774254-25774603 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 181-520 |
| Cow position: | chr8:42486297-42485952 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 181-520 |
| Cow position: | chr8:50928712-50929061 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 138 |
| Conread position: | 181-521 |
| Cow position: | chr8:10741253-10741604 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-527 |
| Cow position: | chr8:17880091-17880439 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 54, 154 |
| Conread position: | 181-528 |
| Cow position: | chr8:33590771-33590415 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 182-413 |
| Cow position: | chr8:21042240-21042474 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-432 |
| Cow position: | chr8:42588857-42588603 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-447 |
| Cow position: | chr8:44701477-44701210 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 182-451 |
| Cow position: | chr8:8913112-8912847 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 51, 130 |
| Conread position: | 182-451 |
| Cow position: | chr8:45143970-45144243 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 51, 134 |
| Conread position: | 182-464 |
| Cow position: | chr8:53382782-53383063 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 53, 145 |
| Conread position: | 182-514 |
| Cow position: | chr8:30156491-30156150 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 182-520 |
| Cow position: | chr8:14257471-14257124 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 56, 144 |
| Conread position: | 182-520 |
| Cow position: | chr8:47675228-47674880 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 56, 127 |
| Conread position: | 182-520 |
| Cow position: | chr8:55272140-55272489 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 56, 144 |
| Conread position: | 182-527 |
| Cow position: | chr8:21205927-21205576 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 101 |
| Conread position: | 184-451 |
| Cow position: | chr8:47659932-47660202 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 49, 125 |
| Conread position: | 185-453 |
| Cow position: | chr8:46217374-46217639 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 13 |
| Conread position: | 186-451 |
| Cow position: | chr8:2168134-2168400 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 47, 141 |
| Conread position: | 187-445 |
| Cow position: | chr8:29032596-29032856 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 118 |
| Conread position: | 187-451 |
| Cow position: | chr8:1151890-1152157 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 139 |
| Conread position: | 187-451 |
| Cow position: | chr8:4688788-4688520 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 141 |
| Conread position: | 187-451 |
| Cow position: | chr8:6465256-6464989 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-451 |
| Cow position: | chr8:8310554-8310291 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 119 |
| Conread position: | 187-451 |
| Cow position: | chr8:18210076-18210340 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 46, 74 |
| Conread position: | 187-451 |
| Cow position: | chr8:21251619-21251351 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-451 |
| Cow position: | chr8:36786417-36786684 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 51, 139 |
| Conread position: | 187-451 |
| Cow position: | chr8:42318890-42319153 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 46, 114 |
| Conread position: | 187-451 |
| Cow position: | chr8:50431771-50432035 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-453 |
| Cow position: | chr8:45793370-45793639 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 187-458 |
| Cow position: | chr8:51700700-51700429 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 138 |
| Conread position: | 187-488 |
| Cow position: | chr8:1581833-1581529 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-493 |
| Cow position: | chr8:46947695-46948008 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-520 |
| Cow position: | chr8:1346864-1347206 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 46, 137 |
| Conread position: | 187-520 |
| Cow position: | chr8:29584610-29584268 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-520 |
| Cow position: | chr8:32435690-32436032 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr8:32629647-32629989 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr8:53837327-53836986 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 51, 139 |
| Conread position: | 188-451 |
| Cow position: | chr8:37655147-37655412 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 45, 121 |
| Conread position: | 191-520 |
| Cow position: | chr8:24191341-24191010 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 42, 110 |
| Conread position: | 192-519 |
| Cow position: | chr8:6063101-6063435 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 41, 117 |
| Conread position: | 192-520 |
| Cow position: | chr8:47067439-47067776 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 41, 136 |
Show alignments to all cow chromosomes.