Cow genome map
| Conread name: | Ss1.1-rptbr0110_c10.5 |
| Conread position: | 173-451 |
| Cow position: | chr9:9648208-9647939 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 60, 45 |
| Conread position: | 175-451 |
| Cow position: | chr9:42311739-42311462 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 138 |
| Conread position: | 175-451 |
| Cow position: | chr9:59538148-59537871 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 21, 65 |
| Conread position: | 176-417 |
| Cow position: | chr9:3935438-3935682 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 20, 89 |
| Conread position: | 181-451 |
| Cow position: | chr9:17303926-17304204 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 132 |
| Conread position: | 181-451 |
| Cow position: | chr9:21411351-21411077 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 144 |
| Conread position: | 181-451 |
| Cow position: | chr9:26737966-26737696 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 181-451 |
| Cow position: | chr9:28023847-28023574 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-451 |
| Cow position: | chr9:31809623-31809349 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-451 |
| Cow position: | chr9:52293408-52293142 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 55, 36 |
| Conread position: | 181-520 |
| Cow position: | chr9:2200594-2200245 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 181-520 |
| Cow position: | chr9:16177633-16177284 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 181-526 |
| Cow position: | chr9:14040145-14040492 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 57, 12 |
| Conread position: | 181-527 |
| Cow position: | chr9:32971104-32970749 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 181-529 |
| Cow position: | chr9:47004779-47004420 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 15, 160 |
| Conread position: | 182-465 |
| Cow position: | chr9:35936976-35937263 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 182-520 |
| Cow position: | chr9:45875556-45875211 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 182-528 |
| Cow position: | chr9:1249959-1250309 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 51, 114 |
| Conread position: | 183-451 |
| Cow position: | chr9:37160775-37161047 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 145 |
| Conread position: | 184-451 |
| Cow position: | chr9:27784225-27783955 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 49, 125 |
| Conread position: | 185-451 |
| Cow position: | chr9:29626389-29626657 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 54, 142 |
| Conread position: | 186-420 |
| Cow position: | chr9:35681444-35681207 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 47, 7 |
| Conread position: | 186-420 |
| Cow position: | chr9:35707610-35707373 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 47, 7 |
| Conread position: | 186-451 |
| Cow position: | chr9:2680317-2680049 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 95 |
| Conread position: | 187-420 |
| Cow position: | chr9:6884359-6884127 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 46, 114 |
| Conread position: | 187-448 |
| Cow position: | chr9:13473751-13474015 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 46, 149 |
| Conread position: | 187-451 |
| Cow position: | chr9:31066755-31066488 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-451 |
| Cow position: | chr9:35594052-35594320 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 45, 100 |
| Conread position: | 187-488 |
| Cow position: | chr9:56302410-56302713 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 187-515 |
| Cow position: | chr9:18507794-18508128 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-520 |
| Cow position: | chr9:203255-203597 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 46, 160 |
| Conread position: | 187-520 |
| Cow position: | chr9:2552386-2552728 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 48, 139 |
| Conread position: | 187-520 |
| Cow position: | chr9:4941764-4942107 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-520 |
| Cow position: | chr9:10938763-10938421 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 187-520 |
| Cow position: | chr9:14002094-14001752 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-520 |
| Cow position: | chr9:28679994-28679652 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-520 |
| Cow position: | chr9:37969187-37969529 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 46, 141 |
| Conread position: | 187-520 |
| Cow position: | chr9:44385288-44384944 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 137 |
| Conread position: | 187-520 |
| Cow position: | chr9:50792754-50792412 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-520 |
| Cow position: | chr9:64013199-64013540 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 187-520 |
| Cow position: | chr9:64014634-64014975 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 188-420 |
| Cow position: | chr9:650010-650246 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 45, 165 |
| Conread position: | 188-451 |
| Cow position: | chr9:3310655-3310385 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 142 |
| Conread position: | 193-469 |
| Cow position: | chr9:31094026-31094303 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 45, 103 |
Show alignments to all cow chromosomes.