Cow genome map

Conread name: Ss1.1-rpty638b_l2.5

Conread position: 1-767
Cow position: chr17:22590279-22589513 (view UCSC Genome Browser custom track)
Alignm length: 771
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 23

Conread position: 1-768
Cow position: chr17:22552273-22551506 (view UCSC Genome Browser custom track)
Alignm length: 772
Alignm identity: 556
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 22

Conread position: 2-609
Cow position: chr17:22473326-22473934 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 410, 375

Conread position: 6-766
Cow position: chr17:22553022-22552264 (view UCSC Genome Browser custom track)
Alignm length: 762
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 12

Conread position: 10-717
Cow position: chr17:22452380-22451674 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 12

Conread position: 10-766
Cow position: chr17:22499395-22498639 (view UCSC Genome Browser custom track)
Alignm length: 763
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 56

Conread position: 12-524
Cow position: chr17:22589680-22589170 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 150

Conread position: 12-699
Cow position: chr17:22499225-22498538 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-449
Cow position: chr17:22452040-22451606 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 268
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 37, 43

Conread position: 15-685
Cow position: chr17:22589845-22589175 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 229

Conread position: 15-710
Cow position: chr17:22552175-22551480 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 42

Conread position: 15-727
Cow position: chr17:41441034-41440322 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 413
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 145, 121

Conread position: 15-750
Cow position: chr17:22589929-22589194 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 562, 542

Conread position: 15-764
Cow position: chr17:22499306-22498557 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 570, 551

Conread position: 15-767
Cow position: chr17:22552343-22551591 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 538
Alignm E-value: 0
Alignm gaps (pig, cow): 555, 548

Conread position: 15-767
Cow position: chr17:22552427-22551675 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 139

Conread position: 15-767
Cow position: chr17:22552511-22551759 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 136

Conread position: 15-767
Cow position: chr17:22552595-22551843 (view UCSC Genome Browser custom track)
Alignm length: 757
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 123

Conread position: 15-767
Cow position: chr17:22552679-22551927 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 130

Conread position: 15-767
Cow position: chr17:22552763-22552011 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 43

Conread position: 15-767
Cow position: chr17:22552847-22552095 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-767
Cow position: chr17:22552931-22552179 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 733, 728

Conread position: 15-767
Cow position: chr17:22590013-22589261 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 640, 613

Conread position: 16-767
Cow position: chr17:22553099-22552347 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 211

Conread position: 17-761
Cow position: chr17:22590179-22589435 (view UCSC Genome Browser custom track)
Alignm length: 746
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 636, 613

Conread position: 21-693
Cow position: chr17:22473261-22473934 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 663, 0

Conread position: 27-731
Cow position: chr17:22590085-22589382 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 124

Conread position: 32-767
Cow position: chr17:22553166-22552431 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 449, 442

Conread position: 33-604
Cow position: chr17:44467715-44468286 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 318
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 33-638
Cow position: chr17:41440848-41440243 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 349
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 104, 112

Conread position: 65-767
Cow position: chr17:22452410-22451708 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 321, 338

Conread position: 75-767
Cow position: chr17:22590289-22589597 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 494, 484

Conread position: 96-767
Cow position: chr17:22499393-22498722 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 58

Conread position: 105-768
Cow position: chr17:22473261-22473924 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 214

Conread position: 159-768
Cow position: chr17:22590289-22589680 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 408, 416

Conread position: 177-766
Cow position: chr17:41441040-41440451 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 343
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 156, 134

Conread position: 180-724
Cow position: chr17:22473174-22473712 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 388, 28

Conread position: 200-768
Cow position: chr17:22553166-22552598 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 455, 445

Conread position: 321-767
Cow position: chr17:22590295-22589849 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 235

Conread position: 432-768
Cow position: chr17:22499393-22499057 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 224
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 315, 311

Conread position: 445-767
Cow position: chr17:22553173-22552851 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 213
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 208, 203

Conread position: 478-722
Cow position: chr17:22590306-22590062 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 165
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 77, 93

Conread position: 483-760
Cow position: chr17:22452412-22452135 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 185
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 595-768
Cow position: chr17:22499398-22499225 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 122
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.