Cow genome map
| Conread name: | Ss1.1-rpty638b_l2.5 |
| Conread position: | 2-767 |
| Cow position: | chr19:23613593-23614358 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 653, 642 |
| Conread position: | 5-766 |
| Cow position: | chr19:23596861-23597618 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 7 |
| Conread position: | 6-767 |
| Cow position: | chr19:23613345-23614106 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 136 |
| Conread position: | 8-766 |
| Cow position: | chr19:14959652-14958911 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 7 |
| Conread position: | 10-763 |
| Cow position: | chr19:43570380-43569642 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 5 |
| Conread position: | 10-766 |
| Cow position: | chr19:23649724-23650479 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 378, 5 |
| Conread position: | 11-468 |
| Cow position: | chr19:14948464-14948008 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 291 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 126, 63 |
| Conread position: | 11-469 |
| Cow position: | chr19:14915963-14916418 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 121 |
| Conread position: | 12-606 |
| Cow position: | chr19:14960304-14959714 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 46 |
| Conread position: | 12-689 |
| Cow position: | chr19:23649809-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 45 |
| Conread position: | 13-723 |
| Cow position: | chr19:20677703-20678413 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 150 |
| Conread position: | 13-767 |
| Cow position: | chr19:20677787-20678541 (view UCSC Genome Browser custom track) |
| Alignm length: | 760 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 244 |
| Conread position: | 15-349 |
| Cow position: | chr19:23597371-23597705 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 37, 42 |
| Conread position: | 15-433 |
| Cow position: | chr19:23597287-23597705 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 134, 124 |
| Conread position: | 15-469 |
| Cow position: | chr19:23597203-23597658 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 120 |
| Conread position: | 15-602 |
| Cow position: | chr19:14959395-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 44 |
| Conread position: | 15-622 |
| Cow position: | chr19:20635627-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 136 |
| Conread position: | 15-686 |
| Cow position: | chr19:14959479-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 46 |
| Conread position: | 15-689 |
| Cow position: | chr19:23614446-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 194 |
| Conread position: | 15-690 |
| Cow position: | chr19:14960384-14959714 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 7 |
| Conread position: | 15-718 |
| Cow position: | chr19:23614194-23614897 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 638, 626 |
| Conread position: | 15-721 |
| Cow position: | chr19:20677957-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 58 |
| Conread position: | 15-724 |
| Cow position: | chr19:20677873-20678582 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 121 |
| Conread position: | 15-724 |
| Cow position: | chr19:23614110-23614819 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 277 |
| Conread position: | 15-755 |
| Cow position: | chr19:23614362-23615102 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 290 |
| Conread position: | 15-761 |
| Cow position: | chr19:14940330-14941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 121 |
| Conread position: | 15-765 |
| Cow position: | chr19:23613522-23614272 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 131 |
| Conread position: | 15-766 |
| Cow position: | chr19:23613690-23614441 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 554, 545 |
| Conread position: | 15-766 |
| Cow position: | chr19:23649308-23650059 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 121 |
| Conread position: | 15-767 |
| Cow position: | chr19:14939994-14940746 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 372 |
| Conread position: | 15-767 |
| Cow position: | chr19:14940078-14940830 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 125 |
| Conread position: | 15-767 |
| Cow position: | chr19:14960051-14959315 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 43 |
| Conread position: | 15-767 |
| Cow position: | chr19:23613438-23614190 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 166 |
| Conread position: | 15-767 |
| Cow position: | chr19:23613774-23614526 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 201 |
| Conread position: | 15-767 |
| Cow position: | chr19:23614026-23614778 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 47 |
| Conread position: | 15-767 |
| Cow position: | chr19:23614278-23615030 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 383 |
| Conread position: | 15-768 |
| Cow position: | chr19:14959563-14958825 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 121 |
| Conread position: | 15-768 |
| Cow position: | chr19:20677453-20678206 (view UCSC Genome Browser custom track) |
| Alignm length: | 760 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 103 |
| Conread position: | 17-767 |
| Cow position: | chr19:14940248-14940998 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 39 |
| Conread position: | 22-767 |
| Cow position: | chr19:20677376-20678121 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 197 |
| Conread position: | 26-767 |
| Cow position: | chr19:20677632-20678373 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 136 |
| Conread position: | 27-693 |
| Cow position: | chr19:23597047-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 126 |
| Conread position: | 27-723 |
| Cow position: | chr19:23613954-23614650 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 32-766 |
| Cow position: | chr19:14959712-14958995 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 32-767 |
| Cow position: | chr19:23649577-23650312 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 716, 711 |
| Conread position: | 33-766 |
| Cow position: | chr19:23649410-23650143 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 28 |
| Conread position: | 33-767 |
| Cow position: | chr19:14940180-14940914 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 349, 360 |
| Conread position: | 33-767 |
| Cow position: | chr19:23649662-23650396 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 118 |
| Conread position: | 33-768 |
| Cow position: | chr19:23596972-23597703 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 61 |
| Conread position: | 36-766 |
| Cow position: | chr19:14960448-14959722 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 190 |
| Conread position: | 40-767 |
| Cow position: | chr19:23596733-23597451 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 67 |
| Conread position: | 55-766 |
| Cow position: | chr19:23596826-23597534 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 342, 207 |
| Conread position: | 75-561 |
| Cow position: | chr19:14948484-14947999 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 292 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 80-706 |
| Cow position: | chr19:20635646-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 82 |
| Conread position: | 88-767 |
| Cow position: | chr19:23649297-23649976 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 292 |
| Conread position: | 91-755 |
| Cow position: | chr19:14960477-14959815 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 128 |
| Conread position: | 93-766 |
| Cow position: | chr19:14939988-14940661 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 49 |
| Conread position: | 165-767 |
| Cow position: | chr19:23613335-23613938 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 477 |
| Conread position: | 171-767 |
| Cow position: | chr19:43570388-43569802 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 177-767 |
| Cow position: | chr19:14939988-14940578 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 216 |
| Conread position: | 238-767 |
| Cow position: | chr19:43570404-43569886 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 415, 11 |
| Conread position: | 243-729 |
| Cow position: | chr19:14948484-14947999 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 81 |
| Conread position: | 243-767 |
| Cow position: | chr19:14960409-14959887 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 248-766 |
| Cow position: | chr19:20635646-20635128 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 225 |
| Conread position: | 248-768 |
| Cow position: | chr19:23649289-23649809 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 147 |
| Conread position: | 254-728 |
| Cow position: | chr19:14915955-14916425 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 291 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 299-765 |
| Cow position: | chr19:14939942-14940408 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 38 |
| Conread position: | 327-760 |
| Cow position: | chr19:14948484-14948052 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 332-767 |
| Cow position: | chr19:20635646-20635211 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 225 |
| Conread position: | 345-767 |
| Cow position: | chr19:14960475-14960055 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 32 |
| Conread position: | 480-764 |
| Cow position: | chr19:23613315-23613599 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 91, 83 |
| Conread position: | 511-768 |
| Cow position: | chr19:14960477-14960220 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 579-767 |
| Cow position: | chr19:14948484-14948297 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 169, 81 |
Show alignments to all cow chromosomes.