Cow genome map


           Conread name:
           Ss1.1-rpty638b_l2.5
        

               Conread position:
               2-767
               

               Cow position:
               
               

               Alignm length:
               768
               

               Alignm identity:
               507
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               653, 642
               

               Conread position:
               5-766
               

               Cow position:
               
               

               Alignm length:
               766
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 7
               

               Conread position:
               6-767
               

               Cow position:
               
               

               Alignm length:
               764
               

               Alignm identity:
               494
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 136
               

               Conread position:
               8-766
               

               Cow position:
               
               

               Alignm length:
               763
               

               Alignm identity:
               495
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 7
               

               Conread position:
               10-763
               

               Cow position:
               
               

               Alignm length:
               757
               

               Alignm identity:
               481
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               394, 5
               

               Conread position:
               10-766
               

               Cow position:
               
               

               Alignm length:
               759
               

               Alignm identity:
               491
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               378, 5
               

               Conread position:
               11-468
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               291
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               126, 63
               

               Conread position:
               11-469
               

               Cow position:
               
               

               Alignm length:
               466
               

               Alignm identity:
               282
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               46, 121
               

               Conread position:
               12-606
               

               Cow position:
               
               

               Alignm length:
               600
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 46
               

               Conread position:
               12-689
               

               Cow position:
               
               

               Alignm length:
               682
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 45
               

               Conread position:
               13-723
               

               Cow position:
               
               

               Alignm length:
               715
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 150
               

               Conread position:
               13-767
               

               Cow position:
               
               

               Alignm length:
               760
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 244
               

               Conread position:
               15-349
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               37, 42
               

               Conread position:
               15-433
               

               Cow position:
               
               

               Alignm length:
               423
               

               Alignm identity:
               263
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               134, 124
               

               Conread position:
               15-469
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 120
               

               Conread position:
               15-602
               

               Cow position:
               
               

               Alignm length:
               591
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 44
               

               Conread position:
               15-622
               

               Cow position:
               
               

               Alignm length:
               610
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 136
               

               Conread position:
               15-686
               

               Cow position:
               
               

               Alignm length:
               680
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 46
               

               Conread position:
               15-689
               

               Cow position:
               
               

               Alignm length:
               677
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 194
               

               Conread position:
               15-690
               

               Cow position:
               
               

               Alignm length:
               681
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 7
               

               Conread position:
               15-718
               

               Cow position:
               
               

               Alignm length:
               705
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               638, 626
               

               Conread position:
               15-721
               

               Cow position:
               
               

               Alignm length:
               709
               

               Alignm identity:
               444
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 58
               

               Conread position:
               15-724
               

               Cow position:
               
               

               Alignm length:
               716
               

               Alignm identity:
               456
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 121
               

               Conread position:
               15-724
               

               Cow position:
               
               

               Alignm length:
               712
               

               Alignm identity:
               464
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               286, 277
               

               Conread position:
               15-755
               

               Cow position:
               
               

               Alignm length:
               745
               

               Alignm identity:
               484
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               295, 290
               

               Conread position:
               15-761
               

               Cow position:
               
               

               Alignm length:
               749
               

               Alignm identity:
               483
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 121
               

               Conread position:
               15-765
               

               Cow position:
               
               

               Alignm length:
               753
               

               Alignm identity:
               488
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 131
               

               Conread position:
               15-766
               

               Cow position:
               
               

               Alignm length:
               756
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               554, 545
               

               Conread position:
               15-766
               

               Cow position:
               
               

               Alignm length:
               756
               

               Alignm identity:
               479
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 121
               

               Conread position:
               15-767
               

               Cow position:
               
               

               Alignm length:
               754
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               382, 372
               

               Conread position:
               15-767
               

               Cow position:
               
               

               Alignm length:
               756
               

               Alignm identity:
               496
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 125
               

               Conread position:
               15-767
               

               Cow position:
               
               

               Alignm length:
               762
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 43
               

               Conread position:
               15-767
               

               Cow position:
               
               

               Alignm length:
               756
               

               Alignm identity:
               489
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 166
               

               Conread position:
               15-767
               

               Cow position:
               
               

               Alignm length:
               757
               

               Alignm identity:
               491
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 201
               

               Conread position:
               15-767
               

               Cow position:
               
               

               Alignm length:
               756
               

               Alignm identity:
               491
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 47
               

               Conread position:
               15-767
               

               Cow position:
               
               

               Alignm length:
               755
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               389, 383
               

               Conread position:
               15-768
               

               Cow position:
               
               

               Alignm length:
               758
               

               Alignm identity:
               490
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 121
               

               Conread position:
               15-768
               

               Cow position:
               
               

               Alignm length:
               760
               

               Alignm identity:
               469
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 103
               

               Conread position:
               17-767
               

               Cow position:
               
               

               Alignm length:
               753
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 39
               

               Conread position:
               22-767
               

               Cow position:
               
               

               Alignm length:
               747
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 197
               

               Conread position:
               26-767
               

               Cow position:
               
               

               Alignm length:
               750
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 136
               

               Conread position:
               27-693
               

               Cow position:
               
               

               Alignm length:
               670
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 126
               

               Conread position:
               27-723
               

               Cow position:
               
               

               Alignm length:
               697
               

               Alignm identity:
               463
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               32-766
               

               Cow position:
               
               

               Alignm length:
               739
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 38
               

               Conread position:
               32-767
               

               Cow position:
               
               

               Alignm length:
               737
               

               Alignm identity:
               464
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               716, 711
               

               Conread position:
               33-766
               

               Cow position:
               
               

               Alignm length:
               739
               

               Alignm identity:
               481
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 28
               

               Conread position:
               33-767
               

               Cow position:
               
               

               Alignm length:
               737
               

               Alignm identity:
               483
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               349, 360
               

               Conread position:
               33-767
               

               Cow position:
               
               

               Alignm length:
               738
               

               Alignm identity:
               475
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 118
               

               Conread position:
               33-768
               

               Cow position:
               
               

               Alignm length:
               742
               

               Alignm identity:
               484
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 61
               

               Conread position:
               36-766
               

               Cow position:
               
               

               Alignm length:
               733
               

               Alignm identity:
               472
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 190
               

               Conread position:
               40-767
               

               Cow position:
               
               

               Alignm length:
               731
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 67
               

               Conread position:
               55-766
               

               Cow position:
               
               

               Alignm length:
               714
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               342, 207
               

               Conread position:
               75-561
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               292
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               80-706
               

               Cow position:
               
               

               Alignm length:
               629
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 82
               

               Conread position:
               88-767
               

               Cow position:
               
               

               Alignm length:
               684
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               263, 292
               

               Conread position:
               91-755
               

               Cow position:
               
               

               Alignm length:
               669
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 128
               

               Conread position:
               93-766
               

               Cow position:
               
               

               Alignm length:
               676
               

               Alignm identity:
               452
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 49
               

               Conread position:
               165-767
               

               Cow position:
               
               

               Alignm length:
               605
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 477
               

               Conread position:
               171-767
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 31
               

               Conread position:
               177-767
               

               Cow position:
               
               

               Alignm length:
               593
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 216
               

               Conread position:
               238-767
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               415, 11
               

               Conread position:
               243-729
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 81
               

               Conread position:
               243-767
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 65
               

               Conread position:
               248-766
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 225
               

               Conread position:
               248-768
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 147
               

               Conread position:
               254-728
               

               Cow position:
               
               

               Alignm length:
               480
               

               Alignm identity:
               291
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               40, 16
               

               Conread position:
               299-765
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 38
               

               Conread position:
               327-760
               

               Cow position:
               
               

               Alignm length:
               434
               

               Alignm identity:
               266
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               332-767
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               245, 225
               

               Conread position:
               345-767
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 32
               

               Conread position:
               480-764
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               91, 83
               

               Conread position:
               511-768
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               14, 30
               

               Conread position:
               579-767
               

               Cow position:
               
               

               Alignm length:
               190
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               169, 81
               
Show alignments to all cow chromosomes.